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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107903764   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 ghi-r.1   107903763   pentatricopeptide repeat-containing protein At1g63330 
 ghi-r.1   107903780   pentatricopeptide repeat-containing protein At3g22470, mitochondrial 
 ghi-r.1   107914690   pentatricopeptide repeat-containing protein At1g63330 
 ath-u.5   RPF3   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103864061   pentatricopeptide repeat-containing protein At5g41170, mitochondrial 
 bra-r.6   103846313   pentatricopeptide repeat-containing protein At5g16640, mitochondrial 
 bra-r.6   103843546   pentatricopeptide repeat-containing protein At1g06580 
 bna-r.1   106446207   pentatricopeptide repeat-containing protein At5g41170, mitochondrial-like 
 bna-r.1   106420242   pentatricopeptide repeat-containing protein At1g64580 
 gma-u.5   100786599   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 gma-u.5   100789435   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 vvi-u.5   100253509   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 vvi-u.5   100252034   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 vvi-u.5   100244169   pentatricopeptide repeat-containing protein At1g63330 
 ppo-u.5   7455414   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ppo-u.5   7456326   pentatricopeptide repeat-containing protein At3g22470, mitochondrial 
 ppo-u.5   7497413   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 mtr-u.5   120576067   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-u.5   120576070   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 mtr-u.5   120576109   pentatricopeptide repeat-containing protein At1g12775, mitochondrial 
 sly-u.5   104647283   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-u.5   101244875   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sot-r.1   102605176   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sot-r.1   102604609   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sot-r.1   102601574   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 nta-r.1   107794934   uncharacterized LOC107794934 
 nta-r.1   107799753   uncharacterized LOC107799753 
 nta-r.1   107796154   uncharacterized LOC107796154 

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Top 50 coexpressed genes to 107903764 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107903764 (ghi-r.1 coexpression data)

CoexMap"107903764"


ghiLOC107903764 | Entrez gene ID : 107903764    
Species ghi ath bra bna gma vvi ppo mtr sly sot nta zma cre sbi cit tae osa hvu bdi
Paralog 4 1 3 2 2 3 3 3 2 3 3 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016685409.2 [sequence] [blastp]
XP_040935142.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016685409.2)
chlo 5,  cyto 3,  plas 1,  vacu 1,  golg 1,  golg_plas 1  (predict for XP_040935142.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_016685409.2)
other 7,  mito 3  (predict for XP_040935142.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107903764
ghi-r.1
for
107903763
ghi-r.1
for
107903780
ghi-r.1
for
107914690
ath-u.5
for
RPF3
bra-r.6
for
103864061
bra-r.6
for
103846313
bra-r.6
for
103843546
bna-r.1
for
106446207
bna-r.1
for
106420242
gma-u.5
for
100786599
gma-u.5
for
100789435
vvi-u.5
for
100253509
vvi-u.5
for
100252034
vvi-u.5
for
100244169
ppo-u.5
for
7455414
ppo-u.5
for
7456326
ppo-u.5
for
7497413
mtr-u.5
for
120576067
mtr-u.5
for
120576070
mtr-u.5
for
120576109
sly-u.5
for
104647283
sly-u.5
for
101244875
sot-r.1
for
102605176
sot-r.1
for
102604609
sot-r.1
for
102601574
nta-r.1
for
107794934
nta-r.1
for
107799753
nta-r.1
for
107796154


Ortholog ID: 117
Species ghi ghi ghi ath ath ath bra bra bra bna bna gma gma gma vvi vvi vvi ppo mtr mtr sly sly sot sot sot nta nta nta
Symbol LOC107903764 LOC107903763 LOC121203206 AT1G64580 AT1G62914 AT5G16640 LOC103843088 LOC103843103 LOC103866658 LOC106420242 LOC106397711 LOC102663951 LOC102663208 LOC121173775 LOC100253509 LOC100258882 LOC100852554 LOC18106937 LOC11419137 LOC11422222 LOC104647283 LOC101266330 LOC102604609 LOC102606410 LOC102597388 LOC107811862 LOC107770637 LOC107821834
Function* pentatricopeptide repeat-containing protein At1g12300, mitochondrial pentatricopeptide repeat-containing protein At1g63330 pentatricopeptide repeat-containing protein At3g22470, mitochondrial Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide (PPR) repeat-containing protein Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g12620 pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like pentatricopeptide repeat-containing protein At4g26800 pentatricopeptide repeat-containing protein At1g64580 pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g12300, mitochondrial uncharacterized LOC121173775 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g62914, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g62930, chloroplastic putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g62910 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC107811862 uncharacterized LOC107770637 uncharacterized LOC107821834
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00460 Cyanoamino acid metabolism 2
sot00500 Starch and sucrose metabolism 2
sot00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 5
nta03030 DNA replication 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107903764 107903763 121203206 842766 10723105 831526 103843088 103843103 103866658 106420242 106397711 102663951 102663208 121173775 100253509 100258882 100852554 18106937 11419137 11422222 104647283 101266330 102604609 102606410 102597388 107811862 107770637 107821834
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