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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101244875   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-r.6   101244875   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-u.5   104647283   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-u.5   101266330   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ath-u.5   RPF3   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100786599   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 gma-u.5   100789435   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 vvi-u.5   100258882   pentatricopeptide repeat-containing protein At1g62914, mitochondrial 
 vvi-u.5   100253509   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 vvi-u.5   100852554   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ppo-u.5   7455414   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ppo-u.5   7473913   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ppo-u.5   7497413   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 mtr-u.5   11411617   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 mtr-u.5   120575920   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-u.5   120576066   protein Rf1, mitochondrial 

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Top 50 coexpressed genes to 101244875 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101244875 (sly-u.5 coexpression data)

CoexMap"101244875"


slyLOC101244875 | Entrez gene ID : 101244875      
Species sly ath gma vvi ppo mtr sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 4 1 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004240414.1 [sequence] [blastp]
XP_010321755.1 [sequence] [blastp]
XP_010321758.1 [sequence] [blastp]
XP_010321759.1 [sequence] [blastp]
XP_010321760.1 [sequence] [blastp]
XP_010321761.1 [sequence] [blastp]
XP_010321762.1 [sequence] [blastp]
XP_010321765.1 [sequence] [blastp]
XP_010321766.1 [sequence] [blastp]
XP_025887175.1 [sequence] [blastp]
XP_025887176.1 [sequence] [blastp]
XP_069155071.1 [sequence] [blastp]
XP_069155072.1 [sequence] [blastp]
XP_069155073.1 [sequence] [blastp]
XP_069155074.1 [sequence] [blastp]
XP_069155075.1 [sequence] [blastp]
XP_069155076.1 [sequence] [blastp]
XP_069155077.1 [sequence] [blastp]
XP_069155078.1 [sequence] [blastp]
XP_069155079.1 [sequence] [blastp]
XP_069155080.1 [sequence] [blastp]
XP_069155081.1 [sequence] [blastp]
XP_069155082.1 [sequence] [blastp]
XP_069155083.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_004240414.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_010321755.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_010321758.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_010321759.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_010321760.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_010321761.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_010321762.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_010321765.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_010321766.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_025887175.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_025887176.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155071.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155072.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155073.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155074.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155075.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155076.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155077.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155078.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155079.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155080.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155081.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155082.1)
chlo 6,  chlo_mito 4,  extr 3  (predict for XP_069155083.1)
Subcellular
localization
TargetP
mito 5  (predict for XP_004240414.1)
mito 5  (predict for XP_010321755.1)
mito 5  (predict for XP_010321758.1)
mito 5  (predict for XP_010321759.1)
mito 5  (predict for XP_010321760.1)
mito 5  (predict for XP_010321761.1)
mito 5  (predict for XP_010321762.1)
mito 5  (predict for XP_010321765.1)
mito 5  (predict for XP_010321766.1)
mito 5  (predict for XP_025887175.1)
mito 5  (predict for XP_025887176.1)
mito 5  (predict for XP_069155071.1)
mito 5  (predict for XP_069155072.1)
mito 5  (predict for XP_069155073.1)
mito 5  (predict for XP_069155074.1)
mito 5  (predict for XP_069155075.1)
mito 5  (predict for XP_069155076.1)
mito 5  (predict for XP_069155077.1)
mito 5  (predict for XP_069155078.1)
mito 5  (predict for XP_069155079.1)
mito 5  (predict for XP_069155080.1)
mito 5  (predict for XP_069155081.1)
mito 5  (predict for XP_069155082.1)
mito 5  (predict for XP_069155083.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101244875

.
sly-r.6
for
101244875

.
sly-u.5
for
104647283

.
sly-u.5
for
101266330

.
ath-u.5
for
RPF3

.
gma-u.5
for
100786599

.
gma-u.5
for
100789435

.
vvi-u.5
for
100258882

.
vvi-u.5
for
100253509

.
vvi-u.5
for
100852554

.
ppo-u.5
for
7455414

.
ppo-u.5
for
7473913

.
ppo-u.5
for
7497413

.
mtr-u.5
for
11411617

.
mtr-u.5
for
120575920

.
mtr-u.5
for
120576066

.


Ortholog ID: 117
Species ath ath gma gma sly bra bra vvi vvi ppo mtr ghi ghi bna sot sot nta nta
Symbol AT1G64580 AT1G62914 LOC102663951 LOC121173775 LOC104647283 LOC103843088 LOC103843103 LOC100258882 LOC100253509 LOC18106937 LOC11419137 LOC121203206 LOC107903763 LOC106397711 LOC102597388 LOC102604609 LOC107821834 LOC107770637
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide (PPR) repeat-containing protein putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC121173775 putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g12620 pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like pentatricopeptide repeat-containing protein At1g62914, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At1g62930, chloroplastic putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At3g22470, mitochondrial pentatricopeptide repeat-containing protein At1g63330 pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC107821834 uncharacterized LOC107770637
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00460 Cyanoamino acid metabolism 2
sot00500 Starch and sucrose metabolism 2
sot00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 5
nta03030 DNA replication 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842766 10723105 102663951 121173775 104647283 103843088 103843103 100258882 100253509 18106937 11419137 121203206 107903763 106397711 102597388 102604609 107821834 107770637
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