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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   120575920   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-r.5   120575920   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-u.5   11411617   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 mtr-u.5   120576067   pentatricopeptide repeat-containing protein At1g12300, mitochondrial 
 mtr-u.5   120576070   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 gma-u.5   100786599   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 gma-u.5   100789435   pentatricopeptide repeat-containing protein At1g62930, chloroplastic 
 ppo-u.5   7456326   pentatricopeptide repeat-containing protein At3g22470, mitochondrial 
 ppo-u.5   7455414   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ppo-u.5   7459907   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 ath-u.5   RPF3   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100252034   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 vvi-u.5   100258882   pentatricopeptide repeat-containing protein At1g62914, mitochondrial 
 vvi-u.5   100244169   pentatricopeptide repeat-containing protein At1g63330 
 sly-u.5   104647283   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 
 sly-u.5   101244875   putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial 

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Top 50 coexpressed genes to 120575920 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 120575920 (mtr-u.5 coexpression data)

CoexMap"120575920"


mtrLOC120575920 | Entrez gene ID : 120575920    
Species mtr gma ppo ath vvi sly hvu zma bna cit bra ghi osa sbi bdi nta tae cre sot
Paralog 5 2 3 1 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031930 [list] [network] mitochondria-nucleus signaling pathway  (14 genes)  IEA  
GO:0010019 [list] [network] chloroplast-nucleus signaling pathway  (15 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (642 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_039682734.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  chlo_mito 4  (predict for XP_039682734.1)
Subcellular
localization
TargetP
mito 6,  chlo 4  (predict for XP_039682734.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
120575920
mtr-r.5
for
120575920
mtr-u.5
for
11411617
mtr-u.5
for
120576067
mtr-u.5
for
120576070
gma-u.5
for
100786599
gma-u.5
for
100789435
ppo-u.5
for
7456326
ppo-u.5
for
7455414
ppo-u.5
for
7459907
ath-u.5
for
RPF3
vvi-u.5
for
100252034
vvi-u.5
for
100258882
vvi-u.5
for
100244169
sly-u.5
for
104647283
sly-u.5
for
101244875


Ortholog ID: 117
Species mtr gma gma ppo ath ath bra bra vvi vvi ghi ghi bna sly sot sot nta nta
Symbol LOC11419137 LOC102663951 LOC121173775 LOC18106937 AT1G64580 AT1G62914 LOC103843088 LOC103843103 LOC100258882 LOC100253509 LOC121203206 LOC107903763 LOC106397711 LOC104647283 LOC102597388 LOC102604609 LOC107821834 LOC107770637
Function* putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC121173775 pentatricopeptide repeat-containing protein At1g62930, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At1g12620 pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like pentatricopeptide repeat-containing protein At1g62914, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial pentatricopeptide repeat-containing protein At3g22470, mitochondrial pentatricopeptide repeat-containing protein At1g63330 pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial uncharacterized LOC107821834 uncharacterized LOC107770637
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03250 Viral life cycle - HIV-1 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00460 Cyanoamino acid metabolism 2
sot00500 Starch and sucrose metabolism 2
sot00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 5
nta03030 DNA replication 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 11419137 102663951 121173775 18106937 842766 10723105 103843088 103843103 100258882 100253509 121203206 107903763 106397711 104647283 102597388 102604609 107821834 107770637
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