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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107905007   general transcription and DNA repair factor IIH subunit TFB4 
 ghi-r.1   107923934   general transcription and DNA repair factor IIH subunit TFB4 
 ath-u.5   AT1G18340   basal transcription factor complex subunit-like protein 
 bra-r.6   103872598   general transcription and DNA repair factor IIH subunit TFB4 
 bra-r.6   103835909   general transcription and DNA repair factor IIH subunit TFB4 
 bna-r.1   111198033   general transcription and DNA repair factor IIH subunit TFB4 
 bna-r.1   106351429   general transcription and DNA repair factor IIH subunit TFB4 
 cit-r.1   102625253   general transcription and DNA repair factor IIH subunit TFB4 
 gma-u.5   100810574   general transcription and DNA repair factor IIH subunit TFB4 
 gma-u.5   100776751   general transcription factor IIH subunit 3-like 
 vvi-u.5   100253978   general transcription and DNA repair factor IIH subunit TFB4 
 ppo-u.5   7469148   general transcription and DNA repair factor IIH subunit TFB4 
 mtr-u.5   11419054   general transcription and DNA repair factor IIH subunit TFB4 
 sly-u.5   101258663   general transcription and DNA repair factor IIH subunit TFB4 
 sot-r.1   102595318   general transcription factor IIH subunit 3 
 nta-r.1   107825239   general transcription and DNA repair factor IIH subunit TFB4 
 nta-r.1   107807025   general transcription and DNA repair factor IIH subunit TFB4 
 nta-r.1   107766914   general transcription and DNA repair factor IIH subunit TFB4-like 
 osa-u.5   4328152   general transcription and DNA repair factor IIH subunit TFB4 
 zma-u.5   100192494   RNA polymerase II transcription factor B subunit 4 
 tae-r.2   123143498   general transcription and DNA repair factor IIH subunit TFB4 
 tae-r.2   123136014   general transcription and DNA repair factor IIH subunit TFB4 
 tae-r.2   123131975   general transcription and DNA repair factor IIH subunit TFB4 
 hvu-r.1   123406354   general transcription and DNA repair factor IIH subunit TFB4 
 sbi-r.1   110434936   RNA polymerase II transcription factor B subunit 4 
 bdi-r.1   100830439   general transcription and DNA repair factor IIH subunit TFB4 
 cre-r.1   CHLRE_03g172050v5   uncharacterized protein 

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Top 50 coexpressed genes to 107905007 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107905007 (ghi-r.1 coexpression data)

CoexMap"107905007"


ghiLOC107905007 | Entrez gene ID : 107905007    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 2 2 1 2 1 1 1 1 1 3 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03022 [list] [network] Basal transcription factors (119 genes)
ghi03420 [list] [network] Nucleotide excision repair (188 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (79 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (11 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (32 genes)  IEA  
GO MF
Protein XP_016687038.1 [sequence] [blastp]
XP_040950247.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  mito 1,  plas 1,  extr 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  mito_plas 1,  cyto_E.R. 1  (predict for XP_016687038.1)
nucl 6,  cyto 2,  mito 1,  extr 1,  cysk 1  (predict for XP_040950247.1)
Subcellular
localization
TargetP
other 5,  scret 4  (predict for XP_016687038.1)
other 5,  scret 4  (predict for XP_040950247.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107905007
ghi-r.1
for
107923934
ath-u.5
for
AT1G18340
bra-r.6
for
103872598
bra-r.6
for
103835909
bna-r.1
for
111198033
bna-r.1
for
106351429
cit-r.1
for
102625253
gma-u.5
for
100810574
gma-u.5
for
100776751
vvi-u.5
for
100253978
ppo-u.5
for
7469148
mtr-u.5
for
11419054
sly-u.5
for
101258663
sot-r.1
for
102595318
nta-r.1
for
107825239
nta-r.1
for
107807025
nta-r.1
for
107766914
osa-u.5
for
4328152
zma-u.5
for
100192494
tae-r.2
for
123143498
tae-r.2
for
123136014
tae-r.2
for
123131975
hvu-r.1
for
123406354
sbi-r.1
for
110434936
bdi-r.1
for
100830439
cre-r.1
for
CHLRE_03g172050v5


Ortholog ID: 8241
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107905007 LOC107923934 AT1G18340 LOC103872598 LOC103835909 LOC111198033 LOC106351429 LOC102625253 LOC100810574 LOC100776751 LOC100253978 LOC7469148 LOC11419054 LOC101258663 LOC102595318 LOC107825239 LOC107807025 LOC107766914 LOC4328152 LOC100192494 LOC123143498 LOC123136014 LOC123131975 LOC123406354 LOC110434936 LOC100830439 CHLRE_03g172050v5
Function* general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 basal transcription factor complex subunit-like protein general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription factor IIH subunit 3-like general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription factor IIH subunit 3 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4-like general transcription and DNA repair factor IIH subunit TFB4 RNA polymerase II transcription factor B subunit 4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 RNA polymerase II transcription factor B subunit 4 general transcription and DNA repair factor IIH subunit TFB4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi04120 Ubiquitin mediated proteolysis 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03018 RNA degradation 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03420 Nucleotide excision repair 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00510 N-Glycan biosynthesis 2
sot00513 Various types of N-glycan biosynthesis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107905007 107923934 838415 103872598 103835909 111198033 106351429 102625253 100810574 100776751 100253978 7469148 11419054 101258663 102595318 107825239 107807025 107766914 4328152 100192494 123143498 123136014 123131975 123406354 110434936 100830439 5728919
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