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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g172050v5   uncharacterized protein 
 ath-u.5   AT1G18340   basal transcription factor complex subunit-like protein 
 gma-u.5   100810574   general transcription and DNA repair factor IIH subunit TFB4 
 gma-u.5   100776751   general transcription factor IIH subunit 3-like 
 sly-u.5   101258663   general transcription and DNA repair factor IIH subunit TFB4 
 osa-u.5   4328152   general transcription and DNA repair factor IIH subunit TFB4 
 zma-u.5   100192494   RNA polymerase II transcription factor B subunit 4 
 vvi-u.5   100253978   general transcription and DNA repair factor IIH subunit TFB4 
 ppo-u.5   7469148   general transcription and DNA repair factor IIH subunit TFB4 
 mtr-u.5   11419054   general transcription and DNA repair factor IIH subunit TFB4 

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Top 50 coexpressed genes to CHLRE_03g172050v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g172050v5 (cre-r.1 coexpression data)

CoexMap"5728919"


creCHLRE_03g172050v5 | Entrez gene ID : 5728919    
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03022 [list] [network] Basal transcription factors (19 genes)
cre03420 [list] [network] Nucleotide excision repair (42 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (28 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (405 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (4 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (9 genes)  IEA  
GO MF
Protein XP_042926024.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_042926024.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042926024.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g172050v5

.
ath-u.5
for
AT1G18340

.
gma-u.5
for
100810574

.
gma-u.5
for
100776751

.
sly-u.5
for
101258663

.
osa-u.5
for
4328152

.
zma-u.5
for
100192494

.
vvi-u.5
for
100253978

.
ppo-u.5
for
7469148

.
mtr-u.5
for
11419054

.


Ortholog ID: 8241
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G18340 LOC100776751 LOC100810574 LOC101258663 LOC4328152 LOC100192494 LOC103835909 LOC103872598 LOC100253978 LOC7469148 LOC11419054 LOC123136014 LOC123131975 LOC123406354 LOC107923934 LOC107905007 LOC106351429 LOC111198033 CHLRE_03g172050v5 LOC110434936 LOC102595318 LOC102625253 LOC100830439 LOC107807025 LOC107825239
Function* basal transcription factor complex subunit-like protein general transcription factor IIH subunit 3-like general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 RNA polymerase II transcription factor B subunit 4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 uncharacterized protein RNA polymerase II transcription factor B subunit 4 general transcription factor IIH subunit 3 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4 general transcription and DNA repair factor IIH subunit TFB4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03018 RNA degradation 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03420 Nucleotide excision repair 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 3
ghi04070 Phosphatidylinositol signaling system 3
ghi04120 Ubiquitin mediated proteolysis 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03420 Nucleotide excision repair 3
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00340 Histidine metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00510 N-Glycan biosynthesis 2
sot00513 Various types of N-glycan biosynthesis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838415 100776751 100810574 101258663 4328152 100192494 103835909 103872598 100253978 7469148 11419054 123136014 123131975 123406354 107923934 107905007 106351429 111198033 5728919 110434936 102595318 102625253 100830439 107807025 107825239
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