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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107906690   DNA polymerase epsilon subunit 3 
 ghi-r.1   107959354   DNA polymerase epsilon subunit 3 
 ath-u.5   NF-YB11   nuclear factor Y, subunit B11 
 bra-r.6   103829668   DNA polymerase epsilon subunit 3 
 bna-r.1   106358435   DNA polymerase epsilon subunit 3 
 bna-r.1   106392073   DNA polymerase epsilon subunit 3 
 bna-r.1   106399331   DNA polymerase epsilon subunit 3 
 cit-r.1   102618948   DNA polymerase II subunit B4 
 gma-u.5   100306382   uncharacterized LOC100306382 
 vvi-u.5   100262207   DNA polymerase II subunit B4 
 ppo-u.5   7474909   DNA polymerase II subunit B4 
 mtr-u.5   25492285   DNA polymerase epsilon subunit 3 
 sly-u.5   101260506   DNA polymerase II subunit B4 
 sot-r.1   102603585   DNA polymerase epsilon subunit 3 
 nta-r.1   107808204   DNA polymerase II subunit B4 
 nta-r.1   107808429   uncharacterized LOC107808429 
 osa-u.5   4347894   DNA polymerase II subunit B4 
 zma-u.5   100282897   uncharacterized LOC100282897 
 tae-r.2   123090519   DNA polymerase epsilon subunit D 
 tae-r.2   123095584   DNA polymerase epsilon subunit 3 
 tae-r.2   123087399   DNA polymerase epsilon subunit 3 
 hvu-r.1   123446844   DNA polymerase epsilon subunit 3-like 
 sbi-r.1   8062546   DNA polymerase epsilon subunit 3 
 bdi-r.1   104584736   DNA polymerase epsilon subunit 3 
 cre-r.1   CHLRE_07g341800v5   uncharacterized protein 

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Top 50 coexpressed genes to 107906690 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107906690 (ghi-r.1 coexpression data)

CoexMap"107906690"


ghiLOC107906690 | Entrez gene ID : 107906690    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 3 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03030 [list] [network] DNA replication (97 genes)
ghi03082 [list] [network] ATP-dependent chromatin remodeling (185 genes)
ghi03410 [list] [network] Base excision repair (108 genes)
ghi03420 [list] [network] Nucleotide excision repair (188 genes)
GO BP
GO:0006272 [list] [network] leading strand elongation  (11 genes)  IEA  
GO:0031507 [list] [network] heterochromatin formation  (109 genes)  IEA  
GO:0006974 [list] [network] DNA damage response  (631 genes)  IEA  
GO CC
GO:0008623 [list] [network] CHRAC  (6 genes)  IEA  
GO:0008622 [list] [network] epsilon DNA polymerase complex  (7 genes)  IEA  
GO MF
GO:0031490 [list] [network] chromatin DNA binding  (80 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (254 genes)  IEA  
Protein XP_016689251.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1  (predict for XP_016689251.2)
Subcellular
localization
TargetP
other 4,  scret 3  (predict for XP_016689251.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107906690
ghi-r.1
for
107959354
ath-u.5
for
NF-YB11
bra-r.6
for
103829668
bna-r.1
for
106358435
bna-r.1
for
106392073
bna-r.1
for
106399331
cit-r.1
for
102618948
gma-u.5
for
100306382
vvi-u.5
for
100262207
ppo-u.5
for
7474909
mtr-u.5
for
25492285
sly-u.5
for
101260506
sot-r.1
for
102603585
nta-r.1
for
107808204
nta-r.1
for
107808429
osa-u.5
for
4347894
zma-u.5
for
100282897
tae-r.2
for
123090519
tae-r.2
for
123095584
tae-r.2
for
123087399
hvu-r.1
for
123446844
sbi-r.1
for
8062546
bdi-r.1
for
104584736
cre-r.1
for
CHLRE_07g341800v5


Ortholog ID: 9402
Species ghi ghi ath bra bna bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107906690 LOC107959354 NF-YB11 LOC103829668 LOC106358435 LOC106392073 LOC106399331 LOC102618948 LOC100306382 LOC100262207 LOC7474909 LOC25492285 LOC101260506 LOC102603585 LOC107808204 LOC107808429 LOC4347894 LOC100282897 LOC123090519 LOC123095584 LOC123087399 LOC123446844 LOC8062546 LOC104584736 CHLRE_07g341800v5
Function* DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 nuclear factor Y, subunit B11 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase II subunit B4 uncharacterized LOC100306382 DNA polymerase II subunit B4 DNA polymerase II subunit B4 DNA polymerase epsilon subunit 3 DNA polymerase II subunit B4 DNA polymerase epsilon subunit 3 DNA polymerase II subunit B4 uncharacterized LOC107808429 DNA polymerase II subunit B4 uncharacterized LOC100282897 DNA polymerase epsilon subunit D DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3-like DNA polymerase epsilon subunit 3 DNA polymerase epsilon subunit 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 9
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 6
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 9
ghi03420 Nucleotide excision repair 9
ghi03430 Mismatch repair 7
ghi03410 Base excision repair 6
ghi03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 8
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03082 ATP-dependent chromatin remodeling 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03082 ATP-dependent chromatin remodeling 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03082 ATP-dependent chromatin remodeling 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 3
cit03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03040 Spliceosome 3
sly03082 ATP-dependent chromatin remodeling 3
sly03420 Nucleotide excision repair 2
sly03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 4
sot03410 Base excision repair 3
sot03420 Nucleotide excision repair 3
sot00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 7
nta03420 Nucleotide excision repair 7
nta03410 Base excision repair 5
nta03430 Mismatch repair 5
nta03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 7
nta03420 Nucleotide excision repair 7
nta03410 Base excision repair 5
nta03430 Mismatch repair 5
nta03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 12
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma00190 Oxidative phosphorylation 3
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03010 Ribosome 6
tae03410 Base excision repair 6
tae03420 Nucleotide excision repair 6
tae03430 Mismatch repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 15
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03410 Base excision repair 7
tae03420 Nucleotide excision repair 5
tae03430 Mismatch repair 2
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107906690 107959354 817292 103829668 106358435 106392073 106399331 102618948 100306382 100262207 7474909 25492285 101260506 102603585 107808204 107808429 4347894 100282897 123090519 123095584 123087399 123446844 8062546 104584736 5717994
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