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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107906956   tocopherol cyclase, chloroplastic 
 ghi-r.1   121229241   tocopherol cyclase, chloroplastic 
 ghi-r.1   107953842   tocopherol cyclase, chloroplastic 
 ghi-r.1   107900519   tocopherol cyclase, chloroplastic 
 ath-u.5   VTE1   tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) 
 bra-r.6   103862197   tocopherol cyclase, chloroplastic 
 bna-r.1   106423394   tocopherol cyclase, chloroplastic 
 bna-r.1   106411207   tocopherol cyclase, chloroplastic 
 cit-r.1   102615028   tocopherol cyclase, chloroplastic 
 gma-u.5   100809310   tocopherol cyclase, chloroplastic 
 gma-u.5   100791679   tocopherol cyclase, chloroplastic 
 vvi-u.5   100268095   tocopherol cyclase, chloroplastic 
 ppo-u.5   18107478   tocopherol cyclase, chloroplastic 
 mtr-u.5   25490120   tocopherol cyclase, chloroplastic 
 sly-u.5   101263925   probable tocopherol cyclase, chloroplastic 
 sot-r.1   SXD1   tocopherol cyclase 
 nta-r.1   107806714   probable tocopherol cyclase, chloroplastic 
 nta-r.1   107798727   putative tocopherol cyclase, chloroplastic 
 osa-u.5   4329007   probable tocopherol cyclase, chloroplastic 
 zma-u.5   541877   sucrose export defective 1 
 tae-r.2   123128989   probable tocopherol cyclase, chloroplastic 
 tae-r.2   123181719   probable tocopherol cyclase, chloroplastic 
 tae-r.2   123052679   probable tocopherol cyclase, chloroplastic 
 hvu-r.1   123441129   probable tocopherol cyclase, chloroplastic 
 bdi-r.1   100846924   probable tocopherol cyclase, chloroplastic 
 cre-r.1   CHLRE_01g013801v5   uncharacterized protein 

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Top 50 coexpressed genes to 107906956 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107906956 (ghi-r.1 coexpression data)

CoexMap"107906956"


ghiLOC107906956 | Entrez gene ID : 107906956    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu bdi cre sbi
Paralog 4 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00130 [list] [network] Ubiquinone and other terpenoid-quinone biosynthesis (102 genes)
ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)
GO BP
GO CC
GO MF
GO:0009976 [list] [network] tocopherol cyclase activity  (4 genes)  IEA  
Protein NP_001313913.1 [sequence] [blastp]
XP_016689605.2 [sequence] [blastp]
XP_040948050.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001313913.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_016689605.2)
cyto 6,  chlo 3,  cyto_nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_040948050.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001313913.1)
chlo 7  (predict for XP_016689605.2)
other 4,  mito 4  (predict for XP_040948050.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107906956
ghi-r.1
for
121229241
ghi-r.1
for
107953842
ghi-r.1
for
107900519
ath-u.5
for
VTE1
bra-r.6
for
103862197
bna-r.1
for
106423394
bna-r.1
for
106411207
cit-r.1
for
102615028
gma-u.5
for
100809310
gma-u.5
for
100791679
vvi-u.5
for
100268095
ppo-u.5
for
18107478
mtr-u.5
for
25490120
sly-u.5
for
101263925
sot-r.1
for
SXD1
nta-r.1
for
107806714
nta-r.1
for
107798727
osa-u.5
for
4329007
zma-u.5
for
541877
tae-r.2
for
123128989
tae-r.2
for
123181719
tae-r.2
for
123052679
hvu-r.1
for
123441129
bdi-r.1
for
100846924
cre-r.1
for
CHLRE_01g013801v5


Ortholog ID: 9620
Species ghi ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu bdi cre
Symbol LOC107906956 LOC107953842 LOC107900519 VTE1 LOC103862197 LOC106423394 LOC106411207 LOC102615028 LOC100809310 LOC100791679 LOC100268095 LOC18107478 LOC25490120 LOC101263925 SXD1 LOC107806714 LOC107798727 LOC4329007 LOC541877 LOC123128989 LOC123181719 LOC123052679 LOC123441129 LOC100846924 CHLRE_01g013801v5
Function* tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic tocopherol cyclase probable tocopherol cyclase, chloroplastic putative tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic sucrose export defective 1 probable tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic probable tocopherol cyclase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 5
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi00860 Porphyrin metabolism 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 6
ghi00860 Porphyrin metabolism 4
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 6
ghi00860 Porphyrin metabolism 4
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
ghi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna00100 Steroid biosynthesis 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna01240 Biosynthesis of cofactors 2
bna00100 Steroid biosynthesis 2
bna00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
gma01240 Biosynthesis of cofactors 3
gma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00410 beta-Alanine metabolism 2
nta00770 Pantothenate and CoA biosynthesis 2
nta00906 Carotenoid biosynthesis 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00410 beta-Alanine metabolism 2
nta00770 Pantothenate and CoA biosynthesis 2
nta00906 Carotenoid biosynthesis 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
zma00500 Starch and sucrose metabolism 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae00500 Starch and sucrose metabolism 3
tae00260 Glycine, serine and threonine metabolism 2
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 5
tae00260 Glycine, serine and threonine metabolism 3
tae00750 Vitamin B6 metabolism 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 4
tae00260 Glycine, serine and threonine metabolism 3
tae00750 Vitamin B6 metabolism 3
tae01230 Biosynthesis of amino acids 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107906956 107953842 107900519 829413 103862197 106423394 106411207 102615028 100809310 100791679 100268095 18107478 25490120 101263925 102577462 107806714 107798727 4329007 541877 123128989 123181719 123052679 123441129 100846924 5715077
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