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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107907369   RNA-binding KH domain-containing protein PEPPER 
 ghi-r.1   121204873   RNA-binding KH domain-containing protein PEPPER 
 ghi-r.1   107926280   RNA-binding KH domain-containing protein PEPPER 
 ghi-r.1   107907515   RNA-binding KH domain-containing protein PEPPER 
 ath-u.5   PEP   RNA-binding KH domain-containing protein 
 bra-r.6   103861600   RNA-binding KH domain-containing protein PEPPER 
 bna-r.1   106440866   RNA-binding KH domain-containing protein PEPPER 
 bna-r.1   106429512   RNA-binding KH domain-containing protein PEPPER 
 bna-r.1   125587666   flowering locus K homology domain-like 
 cit-r.1   102607227   RNA-binding KH domain-containing protein PEPPER 
 gma-u.5   100817448   RNA-binding KH domain-containing protein PEPPER 
 gma-u.5   100815466   RNA-binding KH domain-containing protein PEPPER 
 gma-u.5   100807645   RNA-binding KH domain-containing protein PEPPER 
 vvi-u.5   100261643   RNA-binding KH domain-containing protein PEPPER 
 ppo-u.5   18100778   RNA-binding KH domain-containing protein PEPPER 
 ppo-u.5   18107551   RNA-binding KH domain-containing protein PEPPER 
 mtr-u.5   11418634   RNA-binding KH domain-containing protein PEPPER 
 mtr-u.5   11441151   RNA-binding KH domain-containing protein PEPPER 
 sly-u.5   101254606   RNA-binding KH domain-containing protein PEPPER 
 sot-r.1   102580072   RNA-binding KH domain-containing protein PEPPER-like 
 sot-r.1   102587078   RNA-binding KH domain-containing protein PEPPER-like 
 nta-r.1   107831749   RNA-binding KH domain-containing protein PEPPER 
 nta-r.1   107826371   RNA-binding KH domain-containing protein PEPPER 
 nta-r.1   107813880   RNA-binding KH domain-containing protein PEPPER-like 
 osa-u.5   4349406   RNA-binding KH domain-containing protein PEPPER 
 zma-u.5   100282383   nucleic acid binding protein 
 zma-u.5   100283534   nucleic acid binding protein 
 tae-r.2   123052249   RNA-binding KH domain-containing protein PEPPER 
 tae-r.2   123181657   RNA-binding KH domain-containing protein PEPPER 
 tae-r.2   123128241   RNA-binding KH domain-containing protein PEPPER 
 hvu-r.1   123439185   RNA-binding KH domain-containing protein PEPPER-like 
 sbi-r.1   8058065   RNA-binding KH domain-containing protein PEPPER 
 bdi-r.1   100825327   RNA-binding KH domain-containing protein PEPPER 

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Top 50 coexpressed genes to 107907369 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107907369 (ghi-r.1 coexpression data)

CoexMap"107907369"


ghiLOC107907369 | Entrez gene ID : 107907369    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 3 1 3 1 2 2 1 2 3 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010468 [list] [network] regulation of gene expression  (5166 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
Protein XP_016690210.2 [sequence] [blastp]
XP_016690211.2 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 2,  cyto 1,  mito 1,  plas 1,  vacu 1,  mito_plas 1,  cyto_plas 1  (predict for XP_016690210.2)
E.R. 2,  cyto 1,  mito 1,  plas 1,  vacu 1,  mito_plas 1,  cyto_plas 1  (predict for XP_016690211.2)
Subcellular
localization
TargetP
chlo 7,  other 5  (predict for XP_016690210.2)
chlo 7,  other 5  (predict for XP_016690211.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107907369
ghi-r.1
for
121204873
ghi-r.1
for
107926280
ghi-r.1
for
107907515
ath-u.5
for
PEP
bra-r.6
for
103861600
bna-r.1
for
106440866
bna-r.1
for
106429512
bna-r.1
for
125587666
cit-r.1
for
102607227
gma-u.5
for
100817448
gma-u.5
for
100815466
gma-u.5
for
100807645
vvi-u.5
for
100261643
ppo-u.5
for
18100778
ppo-u.5
for
18107551
mtr-u.5
for
11418634
mtr-u.5
for
11441151
sly-u.5
for
101254606
sot-r.1
for
102580072
sot-r.1
for
102587078
nta-r.1
for
107831749
nta-r.1
for
107826371
nta-r.1
for
107813880
osa-u.5
for
4349406
zma-u.5
for
100282383
zma-u.5
for
100283534
tae-r.2
for
123052249
tae-r.2
for
123181657
tae-r.2
for
123128241
hvu-r.1
for
123439185
sbi-r.1
for
8058065
bdi-r.1
for
100825327


Ortholog ID: 5351
Species ghi ghi ghi ath bra bna bna cit gma gma gma vvi ppo ppo mtr mtr sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC107907369 LOC121204873 LOC107926280 PEP LOC103861600 LOC106429512 LOC106410792 LOC102607227 LOC100817448 LOC100815466 LOC100802089 LOC100261643 LOC18100778 LOC18107551 LOC11418634 LOC11441151 LOC101254606 LOC102580072 LOC102587078 LOC107831749 LOC107826371 LOC107775003 LOC4349406 LOC100282383 LOC100283534 LOC123052249 LOC123181657 LOC123128241 LOC123439185 LOC8058065 LOC100825327
Function* RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER-like RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER-like RNA-binding KH domain-containing protein PEPPER-like RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER nucleic acid binding protein nucleic acid binding protein RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER-like RNA-binding KH domain-containing protein PEPPER RNA-binding KH domain-containing protein PEPPER
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 7
ghi00564 Glycerophospholipid metabolism 4
ghi00565 Ether lipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi04144 Endocytosis 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 5
ghi03015 mRNA surveillance pathway 5
ghi03040 Spliceosome 5
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04122 Sulfur relay system 2
gma00500 Starch and sucrose metabolism 2
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
gma00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma04122 Sulfur relay system 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi03015 mRNA surveillance pathway 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
ppo03010 Ribosome 2
ppo03040 Spliceosome 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00260 Glycine, serine and threonine metabolism 2
ppo00460 Cyanoamino acid metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo00670 One carbon pool by folate 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00310 Lysine degradation 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03040 Spliceosome 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03040 Spliceosome 4
tae03018 RNA degradation 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 5
sbi00190 Oxidative phosphorylation 5
sbi03040 Spliceosome 3
sbi03015 mRNA surveillance pathway 3
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi04120 Ubiquitin mediated proteolysis 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107907369 121204873 107926280 828706 103861600 106429512 106410792 102607227 100817448 100815466 100802089 100261643 18100778 18107551 11418634 11441151 101254606 102580072 102587078 107831749 107826371 107775003 4349406 100282383 100283534 123052249 123181657 123128241 123439185 8058065 100825327
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