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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107907372   pre-mRNA-processing factor 17 
 ath-u.5   AT1G10580   Transducin/WD40 repeat-like superfamily protein 
 gma-u.5   100816419   pre-mRNA-processing factor 17 
 gma-u.5   100778138   pre-mRNA-processing factor 17 
 vvi-u.5   100260455   uncharacterized LOC100260455 
 ppo-u.5   7475429   uncharacterized LOC7475429 
 ppo-u.5   7494756   uncharacterized LOC7494756 
 mtr-u.5   25493639   pre-mRNA-processing factor 17 
 mtr-u.5   11423131   pre-mRNA-processing factor 17 
 sly-u.5   101258325   uncharacterized LOC101258325 
 osa-u.5   4333045   uncharacterized LOC4333045 
 zma-u.5   103636014   pre-mRNA-processing factor 17 
 zma-u.5   100285823   pre-mRNA-splicing factor PRP17 

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Top 50 coexpressed genes to 107907372 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107907372 (ghi-r.1 coexpression data)

CoexMap"107907372"


ghiLOC107907372 | Entrez gene ID : 107907372    
Species ghi ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit bna bdi sbi cre
Paralog 1 1 2 1 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (384 genes)  IEA  
GO CC
GO:0071013 [list] [network] catalytic step 2 spliceosome  (137 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016690218.1 [sequence] [blastp]
XP_016690219.1 [sequence] [blastp]
XP_016690220.1 [sequence] [blastp]
XP_016690221.1 [sequence] [blastp]
XP_016690222.1 [sequence] [blastp]
XP_016690223.1 [sequence] [blastp]
XP_016690225.1 [sequence] [blastp]
XP_040948878.1 [sequence] [blastp]
XP_040948879.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016690218.1)
nucl 9  (predict for XP_016690219.1)
nucl 9  (predict for XP_016690220.1)
nucl 9  (predict for XP_016690221.1)
nucl 9  (predict for XP_016690222.1)
nucl 9  (predict for XP_016690223.1)
nucl 9  (predict for XP_016690225.1)
nucl 9  (predict for XP_040948878.1)
nucl 9  (predict for XP_040948879.1)
Subcellular
localization
TargetP
other 8,  chlo 4  (predict for XP_016690218.1)
other 8,  chlo 4  (predict for XP_016690219.1)
other 8,  chlo 4  (predict for XP_016690220.1)
other 8,  chlo 4  (predict for XP_016690221.1)
other 8,  chlo 4  (predict for XP_016690222.1)
other 8,  chlo 4  (predict for XP_016690223.1)
other 8,  chlo 4  (predict for XP_016690225.1)
other 8,  chlo 4  (predict for XP_040948878.1)
other 8,  chlo 4  (predict for XP_040948879.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107907372

.
ath-u.5
for
AT1G10580

.
gma-u.5
for
100816419

.
gma-u.5
for
100778138

.
vvi-u.5
for
100260455

.
ppo-u.5
for
7475429

.
ppo-u.5
for
7494756

.
mtr-u.5
for
25493639

.
mtr-u.5
for
11423131

.
sly-u.5
for
101258325

.
osa-u.5
for
4333045

.
zma-u.5
for
103636014

.
zma-u.5
for
100285823

.


Ortholog ID: 7025
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT1G10580 LOC100816419 LOC100778138 LOC101258325 LOC4333045 LOC103636014 LOC100285823 LOC103871838 LOC100260455 LOC7494756 LOC7475429 LOC25493639 LOC11423131 LOC123092024 LOC123097277 LOC123448533 LOC107907372 LOC107954761 LOC125575706 LOC106357922 CHLRE_04g226450v5 LOC8077090 LOC102585703 LOC102611505 LOC102614343 LOC100842063 LOC107829018 LOC107826143
Function* Transducin/WD40 repeat-like superfamily protein pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 uncharacterized LOC101258325 uncharacterized LOC4333045 pre-mRNA-processing factor 17 pre-mRNA-splicing factor PRP17 pre-mRNA-processing factor 17 uncharacterized LOC100260455 uncharacterized LOC7494756 uncharacterized LOC7475429 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17 pre-mRNA-processing factor 17-like pre-mRNA-processing factor 17 uncharacterized protein pre-mRNA-processing factor 17 pre-mRNA-processing factor 17-like uncharacterized LOC102611505 uncharacterized LOC102614343 pre-mRNA-processing factor 17 uncharacterized LOC107829018 uncharacterized LOC107826143
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 2
gma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 3
ppo03430 Mismatch repair 3
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03015 mRNA surveillance pathway 4
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03010 Ribosome 4
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837599 100816419 100778138 101258325 4333045 103636014 100285823 103871838 100260455 7494756 7475429 25493639 11423131 123092024 123097277 123448533 107907372 107954761 125575706 106357922 5717809 8077090 102585703 102611505 102614343 100842063 107829018 107826143
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