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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107908741   splicing factor 3A subunit 2 
 ghi-r.1   107907325   splicing factor 3A subunit 2 
 ath-u.5   AT2G32600   hydroxyproline-rich glycoprotein family protein 
 bra-r.6   103867658   splicing factor 3A subunit 2 
 bna-r.1   106352941   splicing factor 3A subunit 2 
 bna-r.1   106451325   splicing factor 3A subunit 2 
 cit-r.1   102607630   uncharacterized LOC102607630 
 gma-u.5   100791333   splicing factor 3A subunit 2 
 vvi-u.5   100245136   uncharacterized LOC100245136 
 ppo-u.5   18100124   uncharacterized LOC18100124 
 ppo-u.5   18106260   uncharacterized LOC18106260 
 mtr-u.5   25500193   splicing factor 3A subunit 2 
 sly-u.5   101255621   uncharacterized LOC101255621 
 sot-r.1   102584531   splicing factor 3A subunit 2 
 nta-r.1   107822419   uncharacterized LOC107822419 
 nta-r.1   107811387   uncharacterized LOC107811387 
 osa-u.5   4332334   uncharacterized LOC4332334 
 zma-u.5   100272589   Splicing factor 3A subunit 2 
 zma-u.5   100273898   male sterile45 
 tae-r.2   123085362   splicing factor 3A subunit 2 
 tae-r.2   123097981   splicing factor 3A subunit 2 
 tae-r.2   123092677   splicing factor 3A subunit 2 
 hvu-r.1   123449088   splicing factor 3A subunit 2 
 sbi-r.1   8054294   splicing factor 3A subunit 2 
 bdi-r.1   100823915   splicing factor 3A subunit 2 
 cre-r.1   CHLRE_06g252700v5   uncharacterized protein 

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Top 50 coexpressed genes to 107908741 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107908741 (ghi-r.1 coexpression data)

CoexMap"107908741"


ghiLOC107908741 | Entrez gene ID : 107908741    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 1 2 1 1 1 2 1 2 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0000245 [list] [network] spliceosomal complex assembly  (46 genes)  IEA  
GO CC
GO:0071004 [list] [network] U2-type prespliceosome  (44 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (61 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (137 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (1753 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (9083 genes)  IEA  
Protein XP_016691490.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for XP_016691490.2)
Subcellular
localization
TargetP
other 7  (predict for XP_016691490.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107908741
ghi-r.1
for
107907325
ath-u.5
for
AT2G32600
bra-r.6
for
103867658
bna-r.1
for
106352941
bna-r.1
for
106451325
cit-r.1
for
102607630
gma-u.5
for
100791333
vvi-u.5
for
100245136
ppo-u.5
for
18100124
ppo-u.5
for
18106260
mtr-u.5
for
25500193
sly-u.5
for
101255621
sot-r.1
for
102584531
nta-r.1
for
107822419
nta-r.1
for
107811387
osa-u.5
for
4332334
zma-u.5
for
100272589
zma-u.5
for
100273898
tae-r.2
for
123085362
tae-r.2
for
123097981
tae-r.2
for
123092677
hvu-r.1
for
123449088
sbi-r.1
for
8054294
bdi-r.1
for
100823915
cre-r.1
for
CHLRE_06g252700v5


Ortholog ID: 9412
Species ghi ghi ath bra bna bna cit gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107908741 LOC107907325 AT2G32600 LOC103867658 LOC106352941 LOC106451325 LOC102607630 LOC100791333 LOC100245136 LOC18100124 LOC18106260 LOC25500193 LOC101255621 LOC102584531 LOC107822419 LOC107811387 LOC4332334 LOC100272589 LOC100273898 LOC123085362 LOC123097981 LOC123092677 LOC123449088 LOC8054294 LOC100823915 CHLRE_06g252700v5
Function* splicing factor 3A subunit 2 splicing factor 3A subunit 2 hydroxyproline-rich glycoprotein family protein splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 uncharacterized LOC102607630 splicing factor 3A subunit 2 uncharacterized LOC100245136 uncharacterized LOC18100124 uncharacterized LOC18106260 splicing factor 3A subunit 2 uncharacterized LOC101255621 splicing factor 3A subunit 2 uncharacterized LOC107822419 uncharacterized LOC107811387 uncharacterized LOC4332334 Splicing factor 3A subunit 2 male sterile45 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03040 Spliceosome 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 10
bna03060 Protein export 2
bna00010 Glycolysis / Gluconeogenesis 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
bna03060 Protein export 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit03040 Spliceosome 3
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot00190 Oxidative phosphorylation 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 10
osa03013 Nucleocytoplasmic transport 4
osa03015 mRNA surveillance pathway 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae04148 Efferocytosis 4
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 10
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107908741 107907325 817820 103867658 106352941 106451325 102607630 100791333 100245136 18100124 18106260 25500193 101255621 102584531 107822419 107811387 4332334 100272589 100273898 123085362 123097981 123092677 123449088 8054294 100823915 5722168
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