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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107909098   isopentenyl-diphosphate Delta-isomerase I 
 ath-u.5   IPP2   isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 
 ath-u.5   IPP1   isopentenyl diphosphate isomerase 1 
 gma-u.5   100789313   isopentenyl-diphosphate Delta-isomerase II-like 
 gma-u.5   100783078   isopentenyl-diphosphate Delta-isomerase I 
 vvi-u.5   100241072   isopentenyl-diphosphate Delta-isomerase I 
 ppo-u.5   7455211   isopentenyl-diphosphate Delta-isomerase I 
 mtr-u.5   11415814   isopentenyl-diphosphate Delta-isomerase I 
 sly-u.5   IDI1   isopentenyl diphosphate isomerase 
 sly-u.5   IDI2   isopentenyl diphosphate isomerase 2 
 osa-u.5   4343523   isopentenyl-diphosphate Delta-isomerase I 
 osa-u.5   4338791   isopentenyl-diphosphate Delta-isomerase I 
 zma-u.5   541901   uncharacterized LOC541901 
 zma-u.5   100502421   uncharacterized LOC100502421 
 zma-u.5   103630362   isopentenyl-diphosphate Delta-isomerase I 

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Top 50 coexpressed genes to 107909098 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107909098 (ghi-r.1 coexpression data)

CoexMap"107909098"


ghiLOC107909098 | Entrez gene ID : 107909098    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 2 2 1 1 1 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00900 [list] [network] Terpenoid backbone biosynthesis (143 genes)
GO BP
GO:0009240 [list] [network] isopentenyl diphosphate biosynthetic process  (28 genes)  IEA  
GO:0008299 [list] [network] isoprenoid biosynthetic process  (292 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004452 [list] [network] isopentenyl-diphosphate delta-isomerase activity  (4 genes)  IEA  
Protein XP_040954868.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 5,  mito 3  (predict for XP_040954868.1)
Subcellular
localization
TargetP
chlo 9,  mito 3  (predict for XP_040954868.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107909098

.
ath-u.5
for
IPP2

.
ath-u.5
for
IPP1

.
gma-u.5
for
100789313

.
gma-u.5
for
100783078

.
vvi-u.5
for
100241072

.
ppo-u.5
for
7455211

.
mtr-u.5
for
11415814

.
sly-u.5
for
IDI1

.
sly-u.5
for
IDI2

.
osa-u.5
for
4343523

.
osa-u.5
for
4338791

.
zma-u.5
for
541901

.
zma-u.5
for
100502421

.
zma-u.5
for
103630362

.


Ortholog ID: 3337
Species ath ath gma gma sly sly osa osa zma zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol IPP1 IPP2 LOC100789313 LOC100783078 IDI1 IDI2 LOC4338791 LOC4343523 LOC103630362 LOC100502421 LOC103858983 LOC100241072 LOC7455211 LOC11415814 LOC123044608 LOC123055768 LOC123425793 LOC123442975 LOC107928371 LOC107909098 LOC125580818 LOC106438951 CHLRE_11g467544v5 LOC8081719 LOC8076958 LOC102595093 LOC102605633 LOC102624321 LOC100828970 LOC100834794 LOC107808544 LOC107828834
Function* isopentenyl diphosphate isomerase 1 isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 isopentenyl-diphosphate Delta-isomerase II-like isopentenyl-diphosphate Delta-isomerase I isopentenyl diphosphate isomerase isopentenyl diphosphate isomerase 2 isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I uncharacterized LOC100502421 isopentenyl-diphosphate Delta-isomerase II, chloroplastic isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase II, chloroplastic uncharacterized protein isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I, chloroplastic-like isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath03013 Nucleocytoplasmic transport 2
ath00510 N-Glycan biosynthesis 2
ath00513 Various types of N-glycan biosynthesis 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 7
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
gma00195 Photosynthesis 4
gma00900 Terpenoid backbone biosynthesis 4
gma00071 Fatty acid degradation 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 9
gma00900 Terpenoid backbone biosynthesis 8
gma01230 Biosynthesis of amino acids 7
gma00030 Pentose phosphate pathway 6
gma00710 Carbon fixation by Calvin cycle 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 3
sly00190 Oxidative phosphorylation 3
sly00480 Glutathione metabolism 2
sly00330 Arginine and proline metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 6
sly01200 Carbon metabolism 3
sly00020 Citrate cycle (TCA cycle) 3
sly01230 Biosynthesis of amino acids 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 5
osa01230 Biosynthesis of amino acids 5
osa00220 Arginine biosynthesis 3
osa01210 2-Oxocarboxylic acid metabolism 3
osa00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma00620 Pyruvate metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 6
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 8
mtr00280 Valine, leucine and isoleucine degradation 3
mtr00650 Butanoate metabolism 3
mtr00020 Citrate cycle (TCA cycle) 3
mtr00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
tae00280 Valine, leucine and isoleucine degradation 4
tae00640 Propanoate metabolism 4
tae00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00270 Cysteine and methionine metabolism 2
hvu00670 One carbon pool by folate 2
hvu00999 Biosynthesis of various plant secondary metabolites 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 5
hvu00220 Arginine biosynthesis 3
hvu00250 Alanine, aspartate and glutamate metabolism 3
hvu01240 Biosynthesis of cofactors 3
hvu00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 12
ghi04146 Peroxisome 2
ghi00071 Fatty acid degradation 2
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 12
ghi04146 Peroxisome 2
ghi00071 Fatty acid degradation 2
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 9
sot00280 Valine, leucine and isoleucine degradation 4
sot00650 Butanoate metabolism 4
sot01200 Carbon metabolism 4
sot00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 3
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 6
cit01240 Biosynthesis of cofactors 3
cit02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831505 820960 100789313 100783078 101255683 100134905 4338791 4343523 103630362 100502421 103858983 100241072 7455211 11415814 123044608 123055768 123425793 123442975 107928371 107909098 125580818 106438951 5726961 8081719 8076958 102595093 102605633 102624321 100828970 100834794 107808544 107828834
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