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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125587558   isopentenyl-diphosphate Delta-isomerase II, chloroplastic-like 
 bna-r.1   125594701   isopentenyl-diphosphate Delta-isomerase I-like 
 bna-r.1   125583344   isopentenyl-diphosphate Delta-isomerase II, chloroplastic-like 
 bna-r.1   125580818   isopentenyl-diphosphate Delta-isomerase I-like 
 bra-r.6   103870894   isopentenyl-diphosphate Delta-isomerase I 
 bra-r.6   103858983   isopentenyl-diphosphate Delta-isomerase II, chloroplastic 
 bra-r.6   103856195   isopentenyl-diphosphate Delta-isomerase II, chloroplastic 
 ath-u.5   IPP2   isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 
 ath-u.5   IPP1   isopentenyl diphosphate isomerase 1 
 ghi-r.1   107928371   isopentenyl-diphosphate Delta-isomerase I 
 ghi-r.1   107909098   isopentenyl-diphosphate Delta-isomerase I 
 cit-r.1   102624321   isopentenyl-diphosphate Delta-isomerase I 
 gma-u.5   100789313   isopentenyl-diphosphate Delta-isomerase II-like 
 gma-u.5   100783078   isopentenyl-diphosphate Delta-isomerase I 
 vvi-u.5   100241072   isopentenyl-diphosphate Delta-isomerase I 
 ppo-u.5   7455211   isopentenyl-diphosphate Delta-isomerase I 
 mtr-u.5   11415814   isopentenyl-diphosphate Delta-isomerase I 
 sly-u.5   IDI1   isopentenyl diphosphate isomerase 
 sly-u.5   IDI2   isopentenyl diphosphate isomerase 2 
 sot-r.1   102595093   isopentenyl-diphosphate Delta-isomerase I 
 sot-r.1   102605633   isopentenyl-diphosphate Delta-isomerase I, chloroplastic-like 
 sot-r.1   102580973   isopentenyl-diphosphate Delta-isomerase I-like 
 nta-r.1   107821727   isopentenyl-diphosphate Delta-isomerase I 
 nta-r.1   107821723   isopentenyl-diphosphate Delta-isomerase I-like 
 osa-u.5   4343523   isopentenyl-diphosphate Delta-isomerase I 
 osa-u.5   4338791   isopentenyl-diphosphate Delta-isomerase I 
 zma-u.5   541901   uncharacterized LOC541901 
 zma-u.5   100502421   uncharacterized LOC100502421 
 zma-u.5   103630362   isopentenyl-diphosphate Delta-isomerase I 
 tae-r.2   100192161   isopentenyl-diphosphate Delta-isomerase I 
 tae-r.2   123044608   isopentenyl-diphosphate Delta-isomerase I 
 tae-r.2   123052483   isopentenyl-diphosphate Delta-isomerase I 
 hvu-r.1   123425793   isopentenyl-diphosphate Delta-isomerase I-like 
 hvu-r.1   123442975   isopentenyl-diphosphate Delta-isomerase I-like 
 sbi-r.1   8076958   isopentenyl-diphosphate Delta-isomerase I 
 sbi-r.1   8081719   isopentenyl-diphosphate Delta-isomerase I 
 bdi-r.1   100834794   isopentenyl-diphosphate Delta-isomerase I 
 bdi-r.1   100828970   isopentenyl-diphosphate Delta-isomerase I 
 cre-r.1   CHLRE_11g467544v5   uncharacterized protein 

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Top 50 coexpressed genes to 125587558 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125587558 (bna-r.1 coexpression data)

CoexMap"125587558"


bnaLOC125587558 | Entrez gene ID : 125587558    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 2 1 2 1 1 1 2 3 2 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00900 [list] [network] Terpenoid backbone biosynthesis (170 genes)
GO BP
GO:0009240 [list] [network] isopentenyl diphosphate biosynthetic process  (26 genes)  IEA  
GO:0008299 [list] [network] isoprenoid biosynthetic process  (278 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (16489 genes)  IEA  
GO MF
GO:0004452 [list] [network] isopentenyl-diphosphate delta-isomerase activity  (8 genes)  IEA  
Protein XP_048614245.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for XP_048614245.1)
Subcellular
localization
TargetP
chlo 8,  mito 6  (predict for XP_048614245.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125587558
bna-r.1
for
125594701
bna-r.1
for
125583344
bna-r.1
for
125580818
bra-r.6
for
103870894
bra-r.6
for
103858983
bra-r.6
for
103856195
ath-u.5
for
IPP2
ath-u.5
for
IPP1
ghi-r.1
for
107928371
ghi-r.1
for
107909098
cit-r.1
for
102624321
gma-u.5
for
100789313
gma-u.5
for
100783078
vvi-u.5
for
100241072
ppo-u.5
for
7455211
mtr-u.5
for
11415814
sly-u.5
for
IDI1
sly-u.5
for
IDI2
sot-r.1
for
102595093
sot-r.1
for
102605633
sot-r.1
for
102580973
nta-r.1
for
107821727
nta-r.1
for
107821723
osa-u.5
for
4343523
osa-u.5
for
4338791
zma-u.5
for
541901
zma-u.5
for
100502421
zma-u.5
for
103630362
tae-r.2
for
100192161
tae-r.2
for
123044608
tae-r.2
for
123052483
hvu-r.1
for
123425793
hvu-r.1
for
123442975
sbi-r.1
for
8076958
sbi-r.1
for
8081719
bdi-r.1
for
100834794
bdi-r.1
for
100828970
cre-r.1
for
CHLRE_11g467544v5


Ortholog ID: 3337
Species bna bna bna bra bra ath ath ghi ghi cit gma gma vvi ppo mtr sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC125580818 LOC106438951 LOC106433324 LOC103858983 LOC103856195 IPP2 IPP1 LOC107928371 LOC107909098 LOC102624321 LOC100789313 LOC100783078 LOC100241072 LOC7455211 LOC11415814 IDI1 IDI2 LOC102595093 LOC102605633 LOC102580973 LOC107808635 LOC107808544 LOC107828834 LOC4343523 LOC4338791 LOC541901 LOC100502421 LOC103630362 LOC100192161 LOC123044608 LOC123055768 LOC123425793 LOC123442975 LOC8076958 LOC8081719 LOC100834794 LOC100828970 CHLRE_11g467544v5
Function* isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase II, chloroplastic isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase II, chloroplastic isopentenyl-diphosphate Delta-isomerase II, chloroplastic isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 isopentenyl diphosphate isomerase 1 isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase II-like isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl diphosphate isomerase isopentenyl diphosphate isomerase 2 isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I, chloroplastic-like isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I uncharacterized LOC541901 uncharacterized LOC100502421 isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase I-like isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I isopentenyl-diphosphate Delta-isomerase I uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 7
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath03013 Nucleocytoplasmic transport 2
ath00510 N-Glycan biosynthesis 2
ath00513 Various types of N-glycan biosynthesis 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 12
ghi04146 Peroxisome 2
ghi00071 Fatty acid degradation 2
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 12
ghi04146 Peroxisome 2
ghi00071 Fatty acid degradation 2
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00900 Terpenoid backbone biosynthesis 6
cit01240 Biosynthesis of cofactors 3
cit02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 4
gma00195 Photosynthesis 4
gma00900 Terpenoid backbone biosynthesis 4
gma00071 Fatty acid degradation 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 9
gma00900 Terpenoid backbone biosynthesis 8
gma01230 Biosynthesis of amino acids 7
gma00030 Pentose phosphate pathway 6
gma00710 Carbon fixation by Calvin cycle 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 6
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00900 Terpenoid backbone biosynthesis 8
mtr00280 Valine, leucine and isoleucine degradation 3
mtr00650 Butanoate metabolism 3
mtr00020 Citrate cycle (TCA cycle) 3
mtr00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 3
sly00190 Oxidative phosphorylation 3
sly00480 Glutathione metabolism 2
sly00330 Arginine and proline metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 6
sly01200 Carbon metabolism 3
sly00020 Citrate cycle (TCA cycle) 3
sly01230 Biosynthesis of amino acids 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 9
sot00280 Valine, leucine and isoleucine degradation 4
sot00650 Butanoate metabolism 4
sot01200 Carbon metabolism 4
sot00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 3
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 8
sot00100 Steroid biosynthesis 3
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 5
osa01230 Biosynthesis of amino acids 5
osa00220 Arginine biosynthesis 3
osa01210 2-Oxocarboxylic acid metabolism 3
osa00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 5
zma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma00620 Pyruvate metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae00750 Vitamin B6 metabolism 3
tae01240 Biosynthesis of cofactors 3
tae00350 Tyrosine metabolism 2
tae00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 3
tae00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 8
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
tae00280 Valine, leucine and isoleucine degradation 4
tae00640 Propanoate metabolism 4
tae00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00270 Cysteine and methionine metabolism 2
hvu00670 One carbon pool by folate 2
hvu00999 Biosynthesis of various plant secondary metabolites 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 5
hvu00220 Arginine biosynthesis 3
hvu00250 Alanine, aspartate and glutamate metabolism 3
hvu01240 Biosynthesis of cofactors 3
hvu00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125580818 106438951 106433324 103858983 103856195 820960 831505 107928371 107909098 102624321 100789313 100783078 100241072 7455211 11415814 101255683 100134905 102595093 102605633 102580973 107808635 107808544 107828834 4343523 4338791 541901 100502421 103630362 100192161 123044608 123055768 123425793 123442975 8076958 8081719 100834794 100828970 5726961
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