ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107909674	probable nucleoredoxin 1
ath-u.5	AT4G31240	protein kinase C-like zinc finger protein
ath-u.5	AT1G60420	DC1 domain-containing protein
gma-u.5	100815038	thioredoxin-like superfamily protein
gma-u.5	100809224	probable nucleoredoxin 1
gma-u.5	100791971	probable nucleoredoxin 3
vvi-u.5	100852797	probable nucleoredoxin 1
vvi-u.5	100244715	probable nucleoredoxin 1
vvi-u.5	100257684	probable nucleoredoxin 3
ppo-u.5	7485616	probable nucleoredoxin 2
ppo-u.5	18096085	probable nucleoredoxin 2
mtr-u.5	11427353	putative protein-disulfide reductase
mtr-u.5	25501353	probable nucleoredoxin 1
mtr-u.5	11442519	probable nucleoredoxin 2
sly-u.5	101250401	probable nucleoredoxin 1
sly-u.5	101245840	probable nucleoredoxin 2
osa-u.5	4336932	probable nucleoredoxin 3
osa-u.5	4333077	probable nucleoredoxin 1-2
osa-u.5	4333075	probable nucleoredoxin 1-1
zma-u.5	100192725	uncharacterized LOC100192725
zma-u.5	100191960	putative nucleoredoxin 1
zma-u.5	542360	nucleoredoxin 1

Top 50 coexpressed genes to 107909674 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107909674 (ghi-r.1 coexpression data)

CoexMap"107909674"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0004791 [list] [network] thioredoxin-disulfide reductase (NADPH) activity

(11 genes)

IEA

Protein

XP_016692782.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2

(predict for XP_016692782.2)

Subcellular
localization
TargetP

other 8, chlo 3

(predict for XP_016692782.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107909674	ath-u.5 for AT4G31240	ath-u.5 for AT1G60420	gma-u.5 for 100815038	gma-u.5 for 100809224	gma-u.5 for 100791971	vvi-u.5 for 100852797	vvi-u.5 for 100244715	vvi-u.5 for 100257684	ppo-u.5 for 7485616	ppo-u.5 for 18096085	mtr-u.5 for 11427353	mtr-u.5 for 25501353	mtr-u.5 for 11442519	sly-u.5 for 101250401	sly-u.5 for 101245840	osa-u.5 for 4336932	osa-u.5 for 4333077	osa-u.5 for 4333075	zma-u.5 for 100192725	zma-u.5 for 100191960	zma-u.5 for 542360

Ortholog

Ortholog ID: 1282

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

probable nucleoredoxin 2

probable nucleoredoxin 3

protein kinase C-like zinc finger protein

DC1 domain-containing protein

probable nucleoredoxin 1

probable nucleoredoxin 3

probable nucleoredoxin 1

probable nucleoredoxin 2

probable nucleoredoxin 1

probable nucleoredoxin 3

probable nucleoredoxin 1

putative protein-disulfide reductase

probable nucleoredoxin 2

probable nucleoredoxin 1

probable nucleoredoxin 2

probable nucleoredoxin 1

probable nucleoredoxin 2

putative nucleoredoxin 1

probable nucleoredoxin 1-1

probable nucleoredoxin 1-2

nucleoredoxin 1

probable nucleoredoxin 3

probable nucleoredoxin 2

probable nucleoredoxin 1-2

probable nucleoredoxin 2

probable nucleoredoxin 1-1

probable nucleoredoxin 1-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	10
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00564	Glycerophospholipid metabolism	2
ath00561	Glycerolipid metabolism	2
ath00750	Vitamin B6 metabolism	2
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	3
ath04141	Protein processing in endoplasmic reticulum	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	5
bna00190	Oxidative phosphorylation	4
bna04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04136	Autophagy - other	7
bna00190	Oxidative phosphorylation	4
bna04075	Plant hormone signal transduction	4
bna00620	Pyruvate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00906	Carotenoid biosynthesis	2
cit04016	MAPK signaling pathway - plant	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00360	Phenylalanine metabolism	3
gma00650	Butanoate metabolism	2
gma00052	Galactose metabolism	2
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00280	Valine, leucine and isoleucine degradation	5
mtr01210	2-Oxocarboxylic acid metabolism	2
mtr04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00860	Porphyrin metabolism	2
mtr04016	MAPK signaling pathway - plant	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	7
sly04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	7
sot04016	MAPK signaling pathway - plant	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	4
nta04145	Phagosome	4
nta04148	Efferocytosis	4
nta04075	Plant hormone signal transduction	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03272	Virion - Hepatitis viruses	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00561	Glycerolipid metabolism	4
zma00566	Sulfoquinovose metabolism	4
zma00740	Riboflavin metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	3
tae00020	Citrate cycle (TCA cycle)	3
tae00620	Pyruvate metabolism	3
tae00785	Lipoic acid metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04145	Phagosome	5
tae04144	Endocytosis	4
tae04148	Efferocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	5
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00071	Fatty acid degradation	5
bdi01212	Fatty acid metabolism	5
bdi00592	alpha-Linolenic acid metabolism	4
bdi04146	Peroxisome	4
bdi00240	Pyrimidine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107905541

107951375

829251

842337

103829793

103852020

106375435

106354717

102618158

102618989

100809224

100791971

100852797

100852822

7477023

11427353

11442519

101250401

101245840

102604942

102580139

107761425

107761428

4333075

4333077

542360

103642043

123062291

123054624

123427791

123440362

8080431

100837204

100841918

5727522

5727523

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Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	2	3	3	2	3	2	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107909674 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107909674 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**