ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107914739	serine/arginine repetitive matrix protein 2
ath-u.5	AT3G23900	RNA recognition motif (RRM)-containing protein
gma-u.5	100790138	uncharacterized LOC100790138
vvi-u.5	100244513	uncharacterized LOC100244513
ppo-u.5	18107089	uncharacterized LOC18107089
ppo-u.5	7461644	uncharacterized LOC7461644
mtr-u.5	25501793	serine/arginine repetitive matrix protein 2
sly-u.5	101244905	uncharacterized LOC101244905
osa-u.5	4326462	uncharacterized LOC4326462
zma-u.5	100279216	RNA recognition motif (RRM)-containing protein
zma-u.5	103649930	nipped-B-like protein B

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding	(3053 genes)	IEA
GO:0046872 [list] [network] metal ion binding	(4664 genes)	IEA
GO:0005515 [list] [network] protein binding	(10797 genes)	IEA

Protein

XP_016699240.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_016699240.1)

Subcellular
localization
TargetP

other 8

(predict for XP_016699240.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107914739	ath-u.5 for AT3G23900	gma-u.5 for 100790138	vvi-u.5 for 100244513	ppo-u.5 for 18107089	ppo-u.5 for 7461644	mtr-u.5 for 25501793	sly-u.5 for 101244905	osa-u.5 for 4326462	zma-u.5 for 100279216	zma-u.5 for 103649930

Ortholog ID: 8025

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

serine/arginine repetitive matrix protein 2

serine/arginine repetitive matrix protein 1

RNA recognition motif (RRM)-containing protein

serine/arginine repetitive matrix protein 2

serine/arginine-rich splicing factor 4

uncharacterized LOC102615780

uncharacterized LOC100790138

uncharacterized LOC100244513

uncharacterized LOC7461644

uncharacterized LOC18107089

serine/arginine repetitive matrix protein 2

uncharacterized LOC101244905

splicing regulatory glutamine/lysine-rich protein 1

uncharacterized LOC107801541

uncharacterized LOC107802588

uncharacterized LOC4326462

nipped-B-like protein B

RNA recognition motif (RRM)-containing protein

uncharacterized LOC123068711

uncharacterized LOC123077219

uncharacterized LOC123442752

serine/arginine-rich splicing factor 11

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03015	mRNA surveillance pathway	3
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	4
nta03013	Nucleocytoplasmic transport	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	4
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	10
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	10
tae04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

107939141

107915112

821973

103828698

106357849

106406042

102615780

100790138

100244513

7461644

18107089

25501793

101244905

102606029

107801541

107802588

4326462

103649930

100279216

123068711

123077219

123442752

8072378

100843156

5721398

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107914739 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107914739 (ghi-r.1 coexpression data)


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	1	1	1	2	1	1	1	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107914739 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107914739 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**