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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107917647   ribulose-phosphate 3-epimerase, cytoplasmic isoform-like 
 ghi-r.1   107926380   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 ghi-r.1   107926357   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 ghi-r.1   107895534   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 ath-u.5   AT3G01850   Aldolase-type TIM barrel family protein 
 ath-u.5   AT1G63290   Aldolase-type TIM barrel family protein 
 bra-r.6   103838288   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 bna-r.1   106420253   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 bna-r.1   106450945   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 gma-u.5   100527490   putative ribulose phosphate 3-epimerase 
 gma-u.5   100500085   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 vvi-u.5   100242409   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 ppo-u.5   112327520   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 mtr-u.5   25497874   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 mtr-u.5   25490535   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 sly-u.5   101262009   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 sot-r.1   102589630   ribulose-phosphate 3-epimerase, cytoplasmic isoform-like 
 nta-r.1   107809939   ribulose-phosphate 3-epimerase, cytoplasmic isoform-like 
 nta-r.1   107802156   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 osa-u.5   4347508   ribulose-phosphate 3-epimerase, cytoplasmic isoform-like 
 zma-u.5   100283478   ribulose-phosphate 3-epimerase 
 tae-r.2   123112560   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 tae-r.2   123104304   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 tae-r.2   123122059   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 hvu-r.1   123399764   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 sbi-r.1   8054783   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 bdi-r.1   100841175   ribulose-phosphate 3-epimerase, cytoplasmic isoform 
 cre-r.1   CHLRE_02g116450v5   uncharacterized protein 

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Top 50 coexpressed genes to 107917647 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107917647 (ghi-r.1 coexpression data)

CoexMap"107917647"


ghiLOC107917647 | Entrez gene ID : 107917647    
Species ghi ath bra bna gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre cit
Paralog 4 2 1 2 2 1 1 2 1 1 2 1 1 3 1 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00030 [list] [network] Pentose phosphate pathway (139 genes)
ghi00040 [list] [network] Pentose and glucuronate interconversions (333 genes)
ghi00710 [list] [network] Carbon fixation by Calvin cycle (194 genes)
ghi01200 [list] [network] Carbon metabolism (681 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0009052 [list] [network] pentose-phosphate shunt, non-oxidative branch  (24 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (1780 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0004750 [list] [network] D-ribulose-phosphate 3-epimerase activity  (8 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (4664 genes)  IEA  
Protein XP_040966945.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_pero 2,  cyto_plas 2  (predict for XP_040966945.1)
Subcellular
localization
TargetP
scret 9  (predict for XP_040966945.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107917647
ghi-r.1
for
107926380
ghi-r.1
for
107926357
ghi-r.1
for
107895534
ath-u.5
for
AT3G01850
ath-u.5
for
AT1G63290
bra-r.6
for
103838288
bna-r.1
for
106420253
bna-r.1
for
106450945
gma-u.5
for
100527490
gma-u.5
for
100500085
vvi-u.5
for
100242409
ppo-u.5
for
112327520
mtr-u.5
for
25497874
mtr-u.5
for
25490535
sly-u.5
for
101262009
sot-r.1
for
102589630
nta-r.1
for
107809939
nta-r.1
for
107802156
osa-u.5
for
4347508
zma-u.5
for
100283478
tae-r.2
for
123112560
tae-r.2
for
123104304
tae-r.2
for
123122059
hvu-r.1
for
123399764
sbi-r.1
for
8054783
bdi-r.1
for
100841175
cre-r.1
for
CHLRE_02g116450v5


Ortholog ID: 8464
Species ghi ghi ghi ath ath bra bna bna gma gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107917647 LOC107926380 LOC107926357 AT3G01850 AT1G63290 LOC103838288 LOC106420253 LOC106450945 LOC100527490 LOC100500085 LOC100242409 LOC112327520 LOC25497874 LOC25490535 LOC101262009 LOC102589630 LOC107809939 LOC107802156 LOC4347508 LOC100283478 LOC123112560 LOC123104304 LOC123122059 LOC123399764 LOC8054783 LOC100841175 CHLRE_02g116450v5
Function* ribulose-phosphate 3-epimerase, cytoplasmic isoform-like ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform Aldolase-type TIM barrel family protein Aldolase-type TIM barrel family protein ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform putative ribulose phosphate 3-epimerase ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform-like ribulose-phosphate 3-epimerase, cytoplasmic isoform-like ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform-like ribulose-phosphate 3-epimerase ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform ribulose-phosphate 3-epimerase, cytoplasmic isoform uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 9
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ghi00020 Citrate cycle (TCA cycle) 4
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 10
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ghi00020 Citrate cycle (TCA cycle) 4
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00190 Oxidative phosphorylation 7
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath00030 Pentose phosphate pathway 4
ath00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna00030 Pentose phosphate pathway 2
bna00040 Pentose and glucuronate interconversions 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna00030 Pentose phosphate pathway 2
bna00040 Pentose and glucuronate interconversions 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 7
ppo00230 Purine metabolism 3
ppo01232 Nucleotide metabolism 3
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
ppo00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 3
mtr03040 Spliceosome 2
mtr04145 Phagosome 2
mtr04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00270 Cysteine and methionine metabolism 3
sot04144 Endocytosis 2
sot03050 Proteasome 2
sot00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta04145 Phagosome 3
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 7
nta04145 Phagosome 5
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 9
zma04145 Phagosome 7
zma04142 Lysosome 3
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 5
tae01230 Biosynthesis of amino acids 5
tae00240 Pyrimidine metabolism 3
tae00030 Pentose phosphate pathway 3
tae00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae00030 Pentose phosphate pathway 3
tae00040 Pentose and glucuronate interconversions 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae00030 Pentose phosphate pathway 3
tae00040 Pentose and glucuronate interconversions 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
hvu04145 Phagosome 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 4
sbi01200 Carbon metabolism 4
sbi00020 Citrate cycle (TCA cycle) 2
sbi00040 Pentose and glucuronate interconversions 2
sbi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi03050 Proteasome 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 2
cre01230 Biosynthesis of amino acids 2
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107917647 107926380 107926357 821068 842635 103838288 106420253 106450945 100527490 100500085 100242409 112327520 25497874 25490535 101262009 102589630 107809939 107802156 4347508 100283478 123112560 123104304 123122059 123399764 8054783 100841175 5725423
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