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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107921315   zinc finger protein VAR3, chloroplastic 
 ghi-r.1   107885927   zinc finger protein VAR3, chloroplastic 
 ath-u.5   AT1G70650   Ran BP2/NZF zinc finger-like superfamily protein 
 bra-r.6   103831601   zinc finger protein VAR3, chloroplastic 
 gma-u.5   102669698   uncharacterized LOC102669698 
 gma-u.5   100812864   zinc finger protein VAR3, chloroplastic 
 vvi-u.5   100264495   uncharacterized LOC100264495 
 ppo-u.5   7462679   zinc finger protein VAR3, chloroplastic 
 mtr-u.5   25482534   zinc finger protein VAR3, chloroplastic 
 sly-u.5   101256901   zinc finger protein VAR3, chloroplastic 
 sot-r.1   102585495   zinc finger protein VAR3, chloroplastic-like 
 nta-r.1   107782298   uncharacterized LOC107782298 
 nta-r.1   107787083   uncharacterized LOC107787083 
 osa-u.5   4333891   zinc finger protein VAR3, chloroplastic 
 zma-u.5   100381589   Ran BP2/NZF zinc finger-like superfamily protein 
 tae-r.2   123089929   uncharacterized LOC123089929 
 tae-r.2   123096595   uncharacterized LOC123096595 
 tae-r.2   123083935   uncharacterized LOC123083935 
 hvu-r.1   123447455   uncharacterized LOC123447455 
 sbi-r.1   8063385   uncharacterized LOC8063385 
 bdi-r.1   100842812   uncharacterized LOC100842812 

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Top 50 coexpressed genes to 107921315 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107921315 (ghi-r.1 coexpression data)

CoexMap"107921315"


ghiLOC107921315 | Entrez gene ID : 107921315    
Species ghi ath bra gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cit cre bna
Paralog 2 1 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (890 genes)  IEA  
Protein XP_016706682.2 [sequence] [blastp]
XP_040942372.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 2,  chlo 1,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_016706682.2)
nucl 5,  mito 2,  chlo 1,  cyto 1,  plas 1,  cysk 1,  cysk_plas 1,  cyto_plas 1  (predict for XP_040942372.1)
Subcellular
localization
TargetP
scret 5  (predict for XP_016706682.2)
scret 5  (predict for XP_040942372.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107921315
ghi-r.1
for
107885927
ath-u.5
for
AT1G70650
bra-r.6
for
103831601
gma-u.5
for
102669698
gma-u.5
for
100812864
vvi-u.5
for
100264495
ppo-u.5
for
7462679
mtr-u.5
for
25482534
sly-u.5
for
101256901
sot-r.1
for
102585495
nta-r.1
for
107782298
nta-r.1
for
107787083
osa-u.5
for
4333891
zma-u.5
for
100381589
tae-r.2
for
123089929
tae-r.2
for
123096595
tae-r.2
for
123083935
hvu-r.1
for
123447455
sbi-r.1
for
8063385
bdi-r.1
for
100842812


Ortholog ID: 11800
Species ghi ghi ath bra gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107921315 LOC107885927 AT1G70650 LOC103831601 LOC102669698 LOC100812864 LOC100264495 LOC7462679 LOC25482534 LOC101256901 LOC102585495 LOC107782298 LOC107787083 LOC4333891 LOC100381589 LOC123089929 LOC123096595 LOC123083935 LOC123447455 LOC8063385 LOC100842812
Function* zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic Ran BP2/NZF zinc finger-like superfamily protein zinc finger protein VAR3, chloroplastic uncharacterized LOC102669698 zinc finger protein VAR3, chloroplastic uncharacterized LOC100264495 zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic zinc finger protein VAR3, chloroplastic-like uncharacterized LOC107782298 uncharacterized LOC107787083 zinc finger protein VAR3, chloroplastic Ran BP2/NZF zinc finger-like superfamily protein uncharacterized LOC123089929 uncharacterized LOC123096595 uncharacterized LOC123083935 uncharacterized LOC123447455 uncharacterized LOC8063385 uncharacterized LOC100842812
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 4
tae04626 Plant-pathogen interaction 3
tae04145 Phagosome 3
tae04148 Efferocytosis 3
tae04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 5
tae04626 Plant-pathogen interaction 3
tae04144 Endocytosis 3
tae04145 Phagosome 3
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04136 Autophagy - other 5
tae04626 Plant-pathogen interaction 3
tae04144 Endocytosis 3
tae04145 Phagosome 3
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107921315 107885927 843402 103831601 102669698 100812864 100264495 7462679 25482534 101256901 102585495 107782298 107787083 4333891 100381589 123089929 123096595 123083935 123447455 8063385 100842812
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