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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107922235   transportin-1 
 ghi-r.1   107947326   transportin-1 
 ghi-r.1   107936992   transportin-1 
 ghi-r.1   107928955   transportin-1 
 ath-u.5   TRN1   transportin 1 
 bra-r.6   103837787   transportin-1 
 bra-r.6   103846004   transportin-1 
 bra-r.6   103860497   transportin-1 
 bna-r.1   106390301   transportin-1-like 
 bna-r.1   106347050   transportin-1 
 bna-r.1   106354809   transportin-1-like 
 cit-r.1   102618840   transportin-1 
 gma-u.5   100792702   transportin-1 
 gma-u.5   100792837   transportin-1 
 vvi-u.5   100250435   transportin-1 
 vvi-u.5   100245339   transportin-1 
 ppo-u.5   7474988   transportin-1 
 ppo-u.5   7453659   transportin-1 
 mtr-u.5   25485640   transportin-1 
 sly-u.5   101246483   transportin-1 
 sot-r.1   102595091   transportin-1 
 nta-r.1   107826613   transportin-1-like 
 nta-r.1   107794641   transportin-1-like 
 nta-r.1   107781589   transportin-1 
 osa-u.5   4337505   transportin-1-like 
 zma-u.5   100381988   Transportin-1 
 zma-u.5   100273670   transportin-1 
 tae-r.2   123191226   transportin-1 
 tae-r.2   123055405   transportin-1 
 tae-r.2   123047598   transportin-1 
 hvu-r.1   123428549   transportin-1 
 sbi-r.1   8076521   transportin-1 
 bdi-r.1   100838433   transportin-1 
 cre-r.1   CHLRE_12g520550v5   uncharacterized protein 

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Top 50 coexpressed genes to 107922235 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107922235 (ghi-r.1 coexpression data)

CoexMap"107922235"


ghiLOC107922235 | Entrez gene ID : 107922235    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 3 3 1 2 2 2 1 1 1 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03013 [list] [network] Nucleocytoplasmic transport (289 genes)
GO BP
GO:0006606 [list] [network] protein import into nucleus  (140 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0061608 [list] [network] nuclear import signal receptor activity  (68 genes)  IEA  
GO:0008139 [list] [network] nuclear localization sequence binding  (73 genes)  IEA  
GO:0031267 [list] [network] small GTPase binding  (80 genes)  IEA  
Protein XP_016707641.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 2,  plas 2,  cyto_plas 2  (predict for XP_016707641.2)
Subcellular
localization
TargetP
other 8  (predict for XP_016707641.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107922235
ghi-r.1
for
107947326
ghi-r.1
for
107936992
ghi-r.1
for
107928955
ath-u.5
for
TRN1
bra-r.6
for
103837787
bra-r.6
for
103846004
bra-r.6
for
103860497
bna-r.1
for
106390301
bna-r.1
for
106347050
bna-r.1
for
106354809
cit-r.1
for
102618840
gma-u.5
for
100792702
gma-u.5
for
100792837
vvi-u.5
for
100250435
vvi-u.5
for
100245339
ppo-u.5
for
7474988
ppo-u.5
for
7453659
mtr-u.5
for
25485640
sly-u.5
for
101246483
sot-r.1
for
102595091
nta-r.1
for
107826613
nta-r.1
for
107794641
nta-r.1
for
107781589
osa-u.5
for
4337505
zma-u.5
for
100381988
zma-u.5
for
100273670
tae-r.2
for
123191226
tae-r.2
for
123055405
tae-r.2
for
123047598
hvu-r.1
for
123428549
sbi-r.1
for
8076521
bdi-r.1
for
100838433
cre-r.1
for
CHLRE_12g520550v5


Ortholog ID: 4860
Species ghi ghi ghi ath bra bra bra bna bna bna cit gma gma vvi vvi ppo ppo mtr sly sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107922235 LOC107947326 LOC107928955 TRN1 LOC103837787 LOC103846004 LOC103860497 LOC106390301 LOC106347050 LOC106428719 LOC102618840 LOC100792702 LOC100792837 LOC100250435 LOC100245339 LOC7474988 LOC7453659 LOC25485640 LOC101246483 LOC102595091 LOC107826613 LOC107794641 LOC107804574 LOC4337505 LOC100381988 LOC100273670 LOC123191226 LOC123055405 LOC123047598 LOC123428549 LOC8076521 LOC100838433 CHLRE_12g520550v5
Function* transportin-1 transportin-1 transportin-1 transportin 1 transportin-1 transportin-1 transportin-1 transportin-1-like transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1-like transportin-1-like transportin-1 transportin-1-like Transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 transportin-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 9
ghi03083 Polycomb repressive complex 2
ghi04148 Efferocytosis 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 9
ghi03083 Polycomb repressive complex 2
ghi04148 Efferocytosis 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 4
ath04120 Ubiquitin mediated proteolysis 3
ath03013 Nucleocytoplasmic transport 3
ath00600 Sphingolipid metabolism 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00510 N-Glycan biosynthesis 2
bra00513 Various types of N-glycan biosynthesis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 3
bra04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna04144 Endocytosis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma04142 Lysosome 2
gma00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 6
vvi04148 Efferocytosis 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly04382 Cornified envelope formation 4
sly04141 Protein processing in endoplasmic reticulum 3
sly03013 Nucleocytoplasmic transport 2
sly04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 4
sot04142 Lysosome 3
sot04144 Endocytosis 3
sot05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 11
zma04120 Ubiquitin mediated proteolysis 3
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 2
zma03013 Nucleocytoplasmic transport 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03013 Nucleocytoplasmic transport 3
sbi04144 Endocytosis 2
sbi04142 Lysosome 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107922235 107947326 107928955 816198 103837787 103846004 103860497 106390301 106347050 106428719 102618840 100792702 100792837 100250435 100245339 7474988 7453659 25485640 101246483 102595091 107826613 107794641 107804574 4337505 100381988 100273670 123191226 123055405 123047598 123428549 8076521 100838433 5722588
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