ATTED-II : GeneCoexpression result

Species	Gene	Description
osa-u.5	4337505	transportin-1-like
osa-r.6	4337505	transportin-1-like
osa-m.8	4337505	transportin-1-like
osa-e.1	4337505	transportin-1-like
zma-u.5	100381988	Transportin-1
zma-u.5	100273670	transportin-1
ath-u.5	TRN1	transportin 1
gma-u.5	100792702	transportin-1
gma-u.5	100792837	transportin-1
sly-u.5	101246483	transportin-1
vvi-u.5	100250435	transportin-1
vvi-u.5	100245339	transportin-1
ppo-u.5	7474988	transportin-1
ppo-u.5	7453659	transportin-1
mtr-u.5	25485640	transportin-1

functional annotation

KEGG

osa03013 [list] [network] Nucleocytoplasmic transport (110 genes)

GO BP

GO:0006606 [list] [network] protein import into nucleus

(47 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus	(3003 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(5212 genes)	IEA

GO MF

GO:0061608 [list] [network] nuclear import signal receptor activity	(14 genes)	IEA
GO:0008139 [list] [network] nuclear localization sequence binding	(18 genes)	IEA
GO:0031267 [list] [network] small GTPase binding	(25 genes)	IEA

Protein

NP_001406954.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 3, nucl 2, cyto 2, cyto_nucl 2, E.R._plas 2

(predict for NP_001406954.1)

Subcellular
localization
TargetP

other 8

(predict for NP_001406954.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4337505	osa-r.6 for 4337505	osa-m.8 for 4337505	osa-e.1 for 4337505	zma-u.5 for 100381988	zma-u.5 for 100273670	ath-u.5 for TRN1	gma-u.5 for 100792702	gma-u.5 for 100792837	sly-u.5 for 101246483	vvi-u.5 for 100250435	vvi-u.5 for 100245339	ppo-u.5 for 7474988	ppo-u.5 for 7453659	mtr-u.5 for 25485640

Ortholog ID: 4860

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

TRN1

Function^*

transportin-1-like

transportin-1

Transportin-1

transportin-1

transportin 1

transportin-1

transportin-1-like

transportin-1

transportin-1-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa03013	Nucleocytoplasmic transport	2
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	2
zma03013	Nucleocytoplasmic transport	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	11
zma04120	Ubiquitin mediated proteolysis	3
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03013	Nucleocytoplasmic transport	3
sbi04144	Endocytosis	2
sbi04142	Lysosome	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	4
ath04120	Ubiquitin mediated proteolysis	3
ath03013	Nucleocytoplasmic transport	3
ath00600	Sphingolipid metabolism	2
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma04142	Lysosome	2
gma00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	4
sly04382	Cornified envelope formation	4
sly04141	Protein processing in endoplasmic reticulum	3
sly03013	Nucleocytoplasmic transport	2
sly04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00510	N-Glycan biosynthesis	2
bra00513	Various types of N-glycan biosynthesis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	6
vvi04148	Efferocytosis	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2
ppo04141	Protein processing in endoplasmic reticulum	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00970	Aminoacyl-tRNA biosynthesis	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	9
ghi03083	Polycomb repressive complex	2
ghi04148	Efferocytosis	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	9
ghi03083	Polycomb repressive complex	2
ghi04148	Efferocytosis	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	4
sot04142	Lysosome	3
sot04144	Endocytosis	3
sot05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	3
cit04141	Protein processing in endoplasmic reticulum	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

4337505

123055405

123047598

123428549

100838433

100273670

100381988

8076521

816198

100792837

100792702

101246483

103860497

103837787

100250435

100245339

7474988

7453659

25485640

107922235

107947326

106390301

106347050

102595091

102618840

107804574

107826613

5722588

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 4337505 (osa-u.5 coexpression data)

Top 50 enrichment test to 4337505 (osa-u.5 coexpression data)


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	2	1	2	1	2	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4337505 (osa-u.5 coexpression data)

Top 50 enrichment test to 4337505 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**