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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107922491   uncharacterized LOC107922491 
 ath-u.5   AT5G63460   SAP domain-containing protein 
 gma-u.5   100817629   uncharacterized LOC100817629 
 gma-u.5   100306690   DDA1 and SAP domain-containing protein 
 vvi-u.5   100264568   uncharacterized LOC100264568 
 ppo-u.5   7454549   uncharacterized LOC7454549 
 ppo-u.5   7463122   uncharacterized LOC7463122 
 mtr-u.5   11407454   uncharacterized LOC11407454 
 sly-u.5   101263894   protein LOWER TEMPERATURE 1 
 osa-u.5   4350522   protein LOWER TEMPERATURE 1 
 osa-u.5   4352144   protein LOWER TEMPERATURE 1 
 zma-u.5   100282101   uncharacterized LOC100282101 

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Top 50 coexpressed genes to 107922491 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107922491 (ghi-r.1 coexpression data)

CoexMap"107922491"


ghiLOC107922491 | Entrez gene ID : 107922491    
Species ghi ath gma vvi ppo mtr sly osa zma hvu bna cit bra sbi bdi nta tae cre sot
Paralog 1 1 2 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (67 genes)  IEA  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (59 genes)  IEA  
GO MF
Protein XP_016708046.1 [sequence] [blastp]
XP_040943019.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  extr 1  (predict for XP_016708046.1)
nucl 9,  cyto 1,  extr 1  (predict for XP_040943019.1)
Subcellular
localization
TargetP
other 6  (predict for XP_016708046.1)
other 6  (predict for XP_040943019.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107922491
ath-u.5
for
AT5G63460
gma-u.5
for
100817629
gma-u.5
for
100306690
vvi-u.5
for
100264568
ppo-u.5
for
7454549
ppo-u.5
for
7463122
mtr-u.5
for
11407454
sly-u.5
for
101263894
osa-u.5
for
4350522
osa-u.5
for
4352144
zma-u.5
for
100282101


Ortholog ID: 6111
Species ghi ghi ath bra bna cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae hvu sbi bdi cre
Symbol LOC107939843 LOC107922491 AT5G63460 LOC103837471 LOC106406925 LOC102610778 LOC100306690 LOC100817629 LOC100264568 LOC7454549 LOC7463122 LOC11407454 LOC101263894 LOC102586503 LOC107797350 LOC107767986 LOC4350522 LOC4352144 LOC100282101 LOC123097102 LOC123085963 LOC123448555 LOC8071826 LOC100822373 CHLRE_02g097334v5
Function* uncharacterized LOC107939843 uncharacterized LOC107922491 SAP domain-containing protein uncharacterized LOC103837471 uncharacterized LOC106406925 hypothetical protein DDA1 and SAP domain-containing protein uncharacterized LOC100817629 uncharacterized LOC100264568 uncharacterized LOC7454549 uncharacterized LOC7463122 uncharacterized LOC11407454 protein LOWER TEMPERATURE 1 uncharacterized LOC102586503 protein LOWER TEMPERATURE 1 protein LOWER TEMPERATURE 1-like protein LOWER TEMPERATURE 1 protein LOWER TEMPERATURE 1 uncharacterized LOC100282101 uncharacterized LOC123097102 uncharacterized LOC123085963 uncharacterized LOC123448555 uncharacterized LOC8071826 uncharacterized LOC100822373 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra03015 mRNA surveillance pathway 2
bra04136 Autophagy - other 2
bra04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03015 mRNA surveillance pathway 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 5
mtr04120 Ubiquitin mediated proteolysis 3
mtr03083 Polycomb repressive complex 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03020 RNA polymerase 3
sly03420 Nucleotide excision repair 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 5
sot03083 Polycomb repressive complex 2
sot04141 Protein processing in endoplasmic reticulum 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
zma03420 Nucleotide excision repair 2
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae03040 Spliceosome 7
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03018 RNA degradation 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 6
cre03410 Base excision repair 4
cre03420 Nucleotide excision repair 4
cre03430 Mismatch repair 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107939843 107922491 836465 103837471 106406925 102610778 100306690 100817629 100264568 7454549 7463122 11407454 101263894 102586503 107797350 107767986 4350522 4352144 100282101 123097102 123085963 123448555 8071826 100822373 5725392
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