ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107923326	jasmonoyl--L-amino acid synthetase JAR4
ghi-r.1	107952940	jasmonoyl--L-amino acid synthetase JAR4
ghi-r.1	107954506	jasmonoyl--L-amino acid synthetase JAR4
ghi-r.1	107933526	jasmonoyl--L-amino acid synthetase JAR4
ath-u.5	JAR1	Auxin-responsive GH3 family protein
bra-r.6	103866275	jasmonoyl--L-amino acid synthetase JAR1
bra-r.6	103858212	jasmonoyl--L-amino acid synthetase JAR1
bra-r.6	103866475	jasmonoyl--L-amino acid synthetase JAR1
bna-r.1	106453225	jasmonoyl--L-amino acid synthetase JAR1-like
bna-r.1	106446159	jasmonoyl--L-amino acid synthetase JAR1
bna-r.1	106438277	jasmonoyl--L-amino acid synthetase JAR1
cit-r.1	127898602	jasmonoyl--L-amino acid synthetase JAR4-like
cit-r.1	102611440	jasmonoyl--L-amino acid synthetase JAR4
gma-u.5	100777944	jasmonoyl--L-amino acid synthetase JAR4
gma-u.5	100794598	jasmonoyl--L-amino acid synthetase JAR4
gma-u.5	100806209	jasmonoyl--L-amino acid synthetase JAR4
vvi-u.5	100251627	jasmonoyl--L-amino acid synthetase JAR4
ppo-u.5	7497237	jasmonoyl--L-amino acid synthetase JAR6
ppo-u.5	7494139	jasmonoyl--L-amino acid synthetase JAR4
mtr-u.5	25500738	jasmonoyl--L-amino acid synthetase JAR6
mtr-u.5	25500734	jasmonoyl--L-amino acid synthetase JAR6
mtr-u.5	11431770	jasmonoyl--L-amino acid synthetase JAR4
sly-u.5	GH3-21	jasmonoyl--L-amino acid synthetase JAR6
sly-u.5	GH3-5	putative indole-3-acetic acid-amido synthetase GH3.5
sly-u.5	JAR1	jasmonoyl--L-amino acid synthetase JAR6
sot-r.1	102600861	probable indole-3-acetic acid-amido synthetase GH3.5
sot-r.1	102578750	probable indole-3-acetic acid-amido synthetase GH3.5
sot-r.1	102603612	probable indole-3-acetic acid-amido synthetase GH3.5
nta-r.1	107761031	jasmonoyl--L-amino acid synthetase JAR6
nta-r.1	107769747	jasmonoyl--L-amino acid synthetase JAR6
nta-r.1	107772988	jasmonoyl--L-amino acid synthetase JAR4
osa-u.5	107275638	probable indole-3-acetic acid-amido synthetase GH3.12
osa-u.5	4339756	jasmonic acid-amido synthetase JAR1-like
osa-u.5	4324650	jasmonoyl--L-amino acid synthetase GH3.3-like
zma-u.5	103649563	probable indole-3-acetic acid-amido synthetase GH3.12
zma-u.5	100381512	Jasmonic acid-amido synthetase JAR1
zma-u.5	100280367	uncharacterized LOC100280367
tae-r.2	123060705	jasmonoyl--L-amino acid synthetase GH3.3
tae-r.2	123069945	jasmonoyl--L-amino acid synthetase GH3.5
tae-r.2	123148866	jasmonoyl--L-amino acid synthetase GH3.5
hvu-r.1	123452116	jasmonoyl--L-amino acid synthetase GH3.5
hvu-r.1	123443188	jasmonoyl--L-amino acid synthetase GH3.3-like
sbi-r.1	8079493	jasmonic acid-amido synthetase JAR2
sbi-r.1	8065295	jasmonic acid-amido synthetase JAR1
sbi-r.1	8084842	jasmonic acid-amido synthetase JAR1
bdi-r.1	100844662	jasmonic acid-amido synthetase JAR2
bdi-r.1	100821807	jasmonic acid-amido synthetase JAR1

Top 50 coexpressed genes to 107923326 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107923326 (ghi-r.1 coexpression data)

CoexMap"107923326"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi04075 [list] [network] Plant hormone signal transduction (1215 genes)

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(13864 genes)

IEA

GO MF

GO:0016881 [list] [network] acid-amino acid ligase activity

(96 genes)

IEA

Protein

XP_016709018.2 [sequence] [blastp]
XP_040961860.1 [sequence] [blastp]
XP_040961861.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 3, cyto_nucl 3, cyto 2, cysk 2, chlo 1, cysk_plas 1	(predict for XP_016709018.2)
nucl 3, cyto_nucl 3, cyto 2, cysk 2, chlo 1, cysk_plas 1	(predict for XP_040961860.1)
nucl 3, cyto_nucl 3, cyto 2, cysk 2, chlo 1, cysk_plas 1	(predict for XP_040961861.1)

Subcellular
localization
TargetP

other 8	(predict for XP_016709018.2)
other 8	(predict for XP_040961860.1)
other 8	(predict for XP_040961861.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107923326	ghi-r.1 for 107952940	ghi-r.1 for 107954506	ghi-r.1 for 107933526	ath-u.5 for JAR1	bra-r.6 for 103866275	bra-r.6 for 103858212	bra-r.6 for 103866475	bna-r.1 for 106453225	bna-r.1 for 106446159	bna-r.1 for 106438277	cit-r.1 for 127898602	cit-r.1 for 102611440	gma-u.5 for 100777944	gma-u.5 for 100794598	gma-u.5 for 100806209	vvi-u.5 for 100251627	ppo-u.5 for 7497237	ppo-u.5 for 7494139	mtr-u.5 for 25500738	mtr-u.5 for 25500734	mtr-u.5 for 11431770	sly-u.5 for GH3-21	sly-u.5 for GH3-5	sly-u.5 for JAR1	sot-r.1 for 102600861	sot-r.1 for 102578750	sot-r.1 for 102603612	nta-r.1 for 107761031	nta-r.1 for 107769747	nta-r.1 for 107772988	osa-u.5 for 107275638	osa-u.5 for 4339756	osa-u.5 for 4324650	zma-u.5 for 103649563	zma-u.5 for 100381512	zma-u.5 for 100280367	tae-r.2 for 123060705	tae-r.2 for 123069945	tae-r.2 for 123148866	hvu-r.1 for 123452116	hvu-r.1 for 123443188	sbi-r.1 for 8079493	sbi-r.1 for 8065295	sbi-r.1 for 8084842	bdi-r.1 for 100844662	bdi-r.1 for 100821807

Ortholog

Ortholog ID: 1796

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

JAR1

GH3-5

GH3-13

GH3-12

Function^*