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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107924482   DNA-directed RNA polymerase III subunit 2 
 ghi-r.1   107904671   DNA-directed RNA polymerase III subunit 2 
 ghi-r.1   107927590   DNA-directed RNA polymerase III subunit 2 
 ghi-r.1   107927589   DNA-directed RNA polymerase III subunit 2 
 ath-u.5   NRPC2   nuclear RNA polymerase C2 
 bra-r.6   103827814   DNA-directed RNA polymerase III subunit 2 
 bna-r.1   106378370   DNA-directed RNA polymerase III subunit 2-like 
 bna-r.1   106386379   DNA-directed RNA polymerase III subunit 2 
 bna-r.1   106391306   DNA-directed RNA polymerase III subunit 2 
 cit-r.1   102608510   DNA-directed RNA polymerase III subunit 2 
 gma-u.5   100818991   DNA-directed RNA polymerase III subunit 2 
 gma-u.5   100790845   DNA-directed RNA polymerase III subunit 2 
 vvi-u.5   100264262   DNA-directed RNA polymerase III subunit 2 
 ppo-u.5   7464475   DNA-directed RNA polymerase III subunit 2 
 mtr-u.5   25500573   DNA-directed RNA polymerase III subunit 2 
 sly-u.5   101254548   DNA-directed RNA polymerase III subunit 2-like 
 sly-u.5   101251637   DNA-directed RNA polymerase III subunit 2 
 sot-r.1   102600550   DNA-directed RNA polymerase III subunit 2-like 
 sot-r.1   102593864   DNA-directed RNA polymerase III subunit 2-like 
 nta-r.1   107832626   DNA-directed RNA polymerase III subunit 2-like 
 nta-r.1   107811698   DNA-directed RNA polymerase III subunit 2 
 osa-u.5   4333066   DNA-directed RNA polymerase III subunit 2 
 zma-u.5   103629391   DNA-directed RNA polymerase III subunit 2 
 tae-r.2   123144083   DNA-directed RNA polymerase III subunit 2 
 tae-r.2   123132501   DNA-directed RNA polymerase III subunit 2 
 tae-r.2   123136573   DNA-directed RNA polymerase III subunit 2 
 hvu-r.1   123401108   DNA-directed RNA polymerase III subunit 2 
 sbi-r.1   8077347   DNA-directed RNA polymerase III subunit 2 
 bdi-r.1   100839519   DNA-directed RNA polymerase III subunit 2 
 cre-r.1   CHLRE_12g542800v5   uncharacterized protein 

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Top 50 coexpressed genes to 107924482 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107924482 (ghi-r.1 coexpression data)

CoexMap"107924482"


ghiLOC107924482 | Entrez gene ID : 107924482    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 3 1 2 1 1 1 2 2 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (617 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (77 genes)  IEA  
GO MF
GO:0032549 [list] [network] ribonucleoside binding  (11 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_040936347.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 1,  cyto 1,  mito_plas 1,  pero 1,  golg 1,  cyto_E.R. 1  (predict for XP_040936347.1)
Subcellular
localization
TargetP
other 9  (predict for XP_040936347.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107924482
ghi-r.1
for
107904671
ghi-r.1
for
107927590
ghi-r.1
for
107927589
ath-u.5
for
NRPC2
bra-r.6
for
103827814
bna-r.1
for
106378370
bna-r.1
for
106386379
bna-r.1
for
106391306
cit-r.1
for
102608510
gma-u.5
for
100818991
gma-u.5
for
100790845
vvi-u.5
for
100264262
ppo-u.5
for
7464475
mtr-u.5
for
25500573
sly-u.5
for
101254548
sly-u.5
for
101251637
sot-r.1
for
102600550
sot-r.1
for
102593864
nta-r.1
for
107832626
nta-r.1
for
107811698
osa-u.5
for
4333066
zma-u.5
for
103629391
tae-r.2
for
123144083
tae-r.2
for
123132501
tae-r.2
for
123136573
hvu-r.1
for
123401108
sbi-r.1
for
8077347
bdi-r.1
for
100839519
cre-r.1
for
CHLRE_12g542800v5


Ortholog ID: 7748
Species ghi ghi ghi ath bra bna bna bna cit gma gma vvi ppo mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107924482 LOC107927590 LOC107927589 NRPC2 LOC103827814 LOC106378370 LOC106386379 LOC106391306 LOC102608510 LOC100818991 LOC100790845 LOC100264262 LOC7464475 LOC25500573 LOC101254548 LOC101251637 LOC102600550 LOC102593864 LOC107832626 LOC107811698 LOC4333066 LOC103629391 LOC123144083 LOC123132501 LOC123136573 LOC123401108 LOC8077347 LOC100839519 CHLRE_12g542800v5
Function* DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 nuclear RNA polymerase C2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2-like DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2-like DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2-like DNA-directed RNA polymerase III subunit 2-like DNA-directed RNA polymerase III subunit 2-like DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 DNA-directed RNA polymerase III subunit 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 6
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 5
ath03008 Ribosome biogenesis in eukaryotes 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03440 Homologous recombination 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03020 RNA polymerase 3
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03015 mRNA surveillance pathway 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 4
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
osa03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03020 RNA polymerase 4
tae03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03040 Spliceosome 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107924482 107927590 107927589 834550 103827814 106378370 106386379 106391306 102608510 100818991 100790845 100264262 7464475 25500573 101254548 101251637 102600550 102593864 107832626 107811698 4333066 103629391 123144083 123132501 123136573 123401108 8077347 100839519 5719529
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