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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107925223   auxin response factor 3 
 ghi-r.1   107901896   auxin response factor 3 
 ghi-r.1   107941725   auxin response factor 3 
 ghi-r.1   121217755   auxin response factor 3 
 ath-u.5   ETT   Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein 
 bra-r.6   ARF3-2   auxin response factor 3 
 bna-r.1   106447200   auxin response factor 3-like 
 bna-r.1   106422928   auxin response factor 3-like 
 bna-r.1   106347201   auxin response factor 3 
 cit-r.1   102630998   auxin response factor 3-like 
 gma-u.5   100789906   auxin response factor 3 
 gma-u.5   100796970   auxin response factor 3 
 gma-u.5   100808119   auxin response factor 3 
 vvi-u.5   100245251   auxin response factor 3 
 ppo-u.5   18103082   auxin response factor 3 
 ppo-u.5   7470245   auxin response factor 3 
 mtr-u.5   25493074   auxin response factor 3 
 mtr-u.5   11437792   auxin response factor 3 
 sly-u.5   ARF3   auxin response factor 3 
 sot-r.1   102582172   auxin response factor 3-like 
 nta-r.1   107803745   auxin response factor 3 
 nta-r.1   107785172   auxin response factor 3 
 osa-u.5   4325895   auxin response factor 2-like 
 osa-u.5   9268260   auxin response factor 15-like 
 zma-u.5   103630727   auxin response factor 15 
 zma-u.5   100384045   uncharacterized LOC100384045 
 tae-r.2   123145822   auxin response factor 15 
 tae-r.2   123078778   auxin response factor 2 
 tae-r.2   123070318   auxin response factor 2 
 hvu-r.1   123450253   auxin response factor 15-like 
 sbi-r.1   8074594   auxin response factor 15 
 sbi-r.1   8080830   auxin response factor 2 
 bdi-r.1   100829904   auxin response factor 2 
 bdi-r.1   100823758   auxin response factor 15 

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Top 50 coexpressed genes to 107925223 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107925223 (ghi-r.1 coexpression data)

CoexMap"107925223"


ghiLOC107925223 | Entrez gene ID : 107925223    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 3 1 3 1 2 2 1 1 2 2 2 3 1 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04075 [list] [network] Plant hormone signal transduction (1215 genes)
GO BP
GO:0009725 [list] [network] response to hormone  (1008 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_040935461.1 [sequence] [blastp]
XP_040935462.1 [sequence] [blastp]
XP_040935463.1 [sequence] [blastp]
XP_040935464.1 [sequence] [blastp]
XP_040935465.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_040935461.1)
nucl 10  (predict for XP_040935462.1)
nucl 10  (predict for XP_040935463.1)
nucl 10  (predict for XP_040935464.1)
nucl 10  (predict for XP_040935465.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for XP_040935461.1)
chlo 7,  other 6  (predict for XP_040935462.1)
chlo 7,  other 6  (predict for XP_040935463.1)
chlo 7,  other 6  (predict for XP_040935464.1)
chlo 7,  other 6  (predict for XP_040935465.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107925223
ghi-r.1
for
107901896
ghi-r.1
for
107941725
ghi-r.1
for
121217755
ath-u.5
for
ETT
bra-r.6
for
ARF3-2
bna-r.1
for
106447200
bna-r.1
for
106422928
bna-r.1
for
106347201
cit-r.1
for
102630998
gma-u.5
for
100789906
gma-u.5
for
100796970
gma-u.5
for
100808119
vvi-u.5
for
100245251
ppo-u.5
for
18103082
ppo-u.5
for
7470245
mtr-u.5
for
25493074
mtr-u.5
for
11437792
sly-u.5
for
ARF3
sot-r.1
for
102582172
nta-r.1
for
107803745
nta-r.1
for
107785172
osa-u.5
for
4325895
osa-u.5
for
9268260
zma-u.5
for
103630727
zma-u.5
for
100384045
tae-r.2
for
123145822
tae-r.2
for
123078778
tae-r.2
for
123070318
hvu-r.1
for
123450253
sbi-r.1
for
8074594
sbi-r.1
for
8080830
bdi-r.1
for
100829904
bdi-r.1
for
100823758


Ortholog ID: 4694
Species ghi ghi ghi ath bra bna bna bna cit gma gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi bdi
Symbol LOC107901896 LOC107941725 LOC121203110 ETT ARF3-2 LOC106447200 LOC106422928 LOC106347201 LOC102630998 LOC100789906 LOC100796970 LOC100808119 LOC100245251 LOC18103082 LOC7470245 LOC25493074 LOC11437792 ARF3 LOC102582172 LOC107803745 LOC107785172 LOC4325895 LOC9268260 LOC103630727 LOC100384045 LOC123145822 LOC123078778 LOC123070318 LOC123450253 LOC8074594 LOC8080830 LOC100829904 LOC100823758
Function* auxin response factor 3 auxin response factor 3 auxin response factor 3 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein auxin response factor 3 auxin response factor 3-like auxin response factor 3-like auxin response factor 3 auxin response factor 3-like auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3 auxin response factor 3-like auxin response factor 3 auxin response factor 3 auxin response factor 2-like auxin response factor 15-like auxin response factor 15 uncharacterized LOC100384045 auxin response factor 15 auxin response factor 2 auxin response factor 2 auxin response factor 15-like auxin response factor 15 auxin response factor 2 auxin response factor 2 auxin response factor 15
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath00270 Cysteine and methionine metabolism 2
ath00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 5
tae04981 Folate transport and metabolism 5
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
sbi03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 5
bdi04075 Plant hormone signal transduction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107901896 107941725 121203110 817956 103865306 106447200 106422928 106347201 102630998 100789906 100796970 100808119 100245251 18103082 7470245 25493074 11437792 778363 102582172 107803745 107785172 4325895 9268260 103630727 100384045 123145822 123078778 123070318 123450253 8074594 8080830 100829904 100823758
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