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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107926317   lysine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.5   OVA5   Lysyl-tRNA synthetase, class II 
 gma-u.5   100787720   lysine--tRNA ligase, chloroplastic/mitochondrial 
 vvi-u.5   100262063   lysine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.5   18097228   lysine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   25500097   lysine--tRNA ligase, chloroplastic/mitochondrial 
 sly-u.5   101243628   lysine--tRNA ligase, chloroplastic/mitochondrial 
 osa-u.5   4330025   lysine--tRNA ligase, chloroplastic/mitochondrial 
 zma-u.5   103645723   lysine--tRNA ligase, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to 107926317 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107926317 (ghi-r.1 coexpression data)

CoexMap"107926317"


ghiLOC107926317 | Entrez gene ID : 107926317    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00970 [list] [network] Aminoacyl-tRNA biosynthesis (172 genes)
GO BP
GO:0006430 [list] [network] lysyl-tRNA aminoacylation  (9 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (1525 genes)  IEA  
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004824 [list] [network] lysine-tRNA ligase activity  (9 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (60 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_016712639.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  mito 1  (predict for XP_016712639.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for XP_016712639.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107926317

.
ath-u.5
for
OVA5

.
gma-u.5
for
100787720

.
vvi-u.5
for
100262063

.
ppo-u.5
for
18097228

.
mtr-u.5
for
25500097

.
sly-u.5
for
101243628

.
osa-u.5
for
4330025

.
zma-u.5
for
103645723

.


Ortholog ID: 10764
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol OVA5 LOC100787720 LOC101243628 LOC4330025 LOC103645723 LOC103870126 LOC100262063 LOC18097228 LOC25500097 LOC123144861 LOC123127738 LOC123401556 LOC107926317 LOC121220173 LOC106452279 LOC106440598 CHLRE_06g296250v5 LOC8080192 LOC102590674 LOC102623380 LOC100837408 LOC107829706 LOC107829241
Function* Lysyl-tRNA synthetase, class II lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial uncharacterized protein lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial lysine--tRNA ligase, chloroplastic/mitochondrial-like lysine--tRNA ligase, chloroplastic/mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00290 Valine, leucine and isoleucine biosynthesis 3
gma00660 C5-Branched dibasic acid metabolism 3
gma01210 2-Oxocarboxylic acid metabolism 3
gma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
sly01240 Biosynthesis of cofactors 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 10
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 5
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra01230 Biosynthesis of amino acids 3
bra00970 Aminoacyl-tRNA biosynthesis 3
bra00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae01240 Biosynthesis of cofactors 3
tae00230 Purine metabolism 2
tae00240 Pyrimidine metabolism 2
tae01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00290 Valine, leucine and isoleucine biosynthesis 2
hvu00770 Pantothenate and CoA biosynthesis 2
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna00970 Aminoacyl-tRNA biosynthesis 3
bna00564 Glycerophospholipid metabolism 2
bna04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
bna03018 RNA degradation 5
bna00230 Purine metabolism 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi00480 Glutathione metabolism 2
sbi01200 Carbon metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
cit03010 Ribosome 2
cit01240 Biosynthesis of cofactors 2
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 7
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04145 Phagosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820551 100787720 101243628 4330025 103645723 103870126 100262063 18097228 25500097 123144861 123127738 123401556 107926317 121220173 106452279 106440598 5717055 8080192 102590674 102623380 100837408 107829706 107829241
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