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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107929169   DNA mismatch repair protein MSH1, mitochondrial-like 
 ghi-r.1   107943117   DNA mismatch repair protein MSH1, mitochondrial 
 ath-u.5   MSH1   MUTL protein homolog 1 
 bra-r.6   103828643   DNA mismatch repair protein MSH1, mitochondrial 
 bna-r.1   106410986   DNA mismatch repair protein MSH1, mitochondrial 
 bna-r.1   106450570   DNA mismatch repair protein MSH1, mitochondrial 
 cit-r.1   102611883   DNA mismatch repair protein MSH1, mitochondrial 
 gma-u.5   MSH1   DNA mismatch repair protein 
 gma-u.5   100798513   DNA mismatch repair protein MSH1, mitochondrial 
 vvi-u.5   100266612   DNA mismatch repair protein MSH1, mitochondrial 
 ppo-u.5   7459994   DNA mismatch repair protein MSH1, mitochondrial 
 mtr-u.5   11419868   DNA mismatch repair protein MSH1, mitochondrial 
 sly-u.5   MSH1   DNA mismatch repair protein MSH1 
 sot-r.1   102580676   DNA mismatch repair protein MSH1, mitochondrial 
 nta-r.1   107796307   DNA mismatch repair protein MSH1, mitochondrial-like 
 nta-r.1   107768689   DNA mismatch repair protein MSH1, mitochondrial 
 osa-u.5   4336345   DNA mismatch repair protein MSH1, mitochondrial 
 zma-u.5   732814   DNA mismatch repair protein 
 tae-r.2   123045973   DNA mismatch repair protein MSH1, mitochondrial 
 tae-r.2   123189726   DNA mismatch repair protein MSH1, mitochondrial 
 tae-r.2   123053851   DNA mismatch repair protein MSH1, mitochondrial 
 hvu-r.1   123427195   DNA mismatch repair protein MSH1, mitochondrial 
 sbi-r.1   8060224   DNA mismatch repair protein MSH1, mitochondrial 
 bdi-r.1   MSH1   DNA mismatch repair protein MSH1, mitochondrial 
 cre-r.1   CHLRE_06g250850v5   uncharacterized protein 

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Top 50 coexpressed genes to 107929169 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107929169 (ghi-r.1 coexpression data)

CoexMap"107929169"


ghiLOC107929169 | Entrez gene ID : 107929169    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006298 [list] [network] mismatch repair  (36 genes)  IEA  
GO CC
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (30 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_040957330.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_040957330.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_040957330.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107929169
ghi-r.1
for
107943117
ath-u.5
for
MSH1
bra-r.6
for
103828643
bna-r.1
for
106410986
bna-r.1
for
106450570
cit-r.1
for
102611883
gma-u.5
for
MSH1
gma-u.5
for
100798513
vvi-u.5
for
100266612
ppo-u.5
for
7459994
mtr-u.5
for
11419868
sly-u.5
for
MSH1
sot-r.1
for
102580676
nta-r.1
for
107796307
nta-r.1
for
107768689
osa-u.5
for
4336345
zma-u.5
for
732814
tae-r.2
for
123045973
tae-r.2
for
123189726
tae-r.2
for
123053851
hvu-r.1
for
123427195
sbi-r.1
for
8060224
bdi-r.1
for
MSH1
cre-r.1
for
CHLRE_06g250850v5


Ortholog ID: 9506
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC107929169 LOC107943117 MSH1 LOC103828643 LOC106410986 LOC106450570 LOC102611883 MSH1 LOC100798513 LOC100266612 LOC7459994 LOC11419868 MSH1 LOC102580676 LOC107796307 LOC107768689 LOC4336345 LOC732814 LOC123045973 LOC123189726 LOC123053851 LOC123427195 LOC8060224 MSH1 CHLRE_06g250850v5
Function* DNA mismatch repair protein MSH1, mitochondrial-like DNA mismatch repair protein MSH1, mitochondrial MUTL protein homolog 1 DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1 DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial-like DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial DNA mismatch repair protein MSH1, mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03030 DNA replication 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 4
ghi03030 DNA replication 3
ghi03420 Nucleotide excision repair 3
ghi03430 Mismatch repair 3
ghi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 8
ath03430 Mismatch repair 6
ath03410 Base excision repair 4
ath03420 Nucleotide excision repair 3
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 5
bna00564 Glycerophospholipid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00230 Purine metabolism 2
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03410 Base excision repair 2
zma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 7
tae03440 Homologous recombination 4
tae03450 Non-homologous end-joining 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 2
tae00770 Pantothenate and CoA biosynthesis 2
tae01210 2-Oxocarboxylic acid metabolism 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00510 N-Glycan biosynthesis 3
cre00513 Various types of N-glycan biosynthesis 3
cre04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107929169 107943117 822021 103828643 106410986 106450570 102611883 732638 100798513 100266612 7459994 11419868 778305 102580676 107796307 107768689 4336345 732814 123045973 123189726 123053851 123427195 8060224 100835189 5722205
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