ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107929268	uncharacterized LOC107929268
ghi-r.1	107920924	bromodomain and WD repeat-containing protein 1
ghi-r.1	107905723	bromodomain-containing protein 9
ghi-r.1	107905759	bromodomain-containing protein 3
ath-u.5	AT1G20670	DNA-binding bromodomain-containing protein
ath-u.5	AT1G76380	DNA-binding bromodomain-containing protein
bra-r.6	103835784	transcription factor GTE4
bra-r.6	103832095	bromodomain-containing protein 9
bra-r.6	103872856	bromodomain-containing protein 9
bna-r.1	125586901	bromodomain-containing protein 9-like
bna-r.1	106421665	bromodomain-containing protein 9-like
bna-r.1	106406353	bromodomain-containing protein 9
cit-r.1	102614471	uncharacterized LOC102614471
cit-r.1	102619091	uncharacterized LOC102619091
gma-u.5	100783010	uncharacterized LOC100783010
gma-u.5	100811115	uncharacterized LOC100811115
vvi-u.5	100245230	uncharacterized LOC100245230
vvi-u.5	100244510	uncharacterized LOC100244510
ppo-u.5	18098152	uncharacterized LOC18098152
ppo-u.5	7485641	uncharacterized LOC7485641
ppo-u.5	7474893	uncharacterized LOC7474893
mtr-u.5	25490319	ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800
sly-u.5	101247829	uncharacterized LOC101247829
sly-u.5	101253085	uncharacterized LOC101253085
sot-r.1	102600883	uncharacterized LOC102600883
sot-r.1	102592615	uncharacterized LOC102592615
nta-r.1	107824075	uncharacterized LOC107824075
nta-r.1	107769129	uncharacterized LOC107769129
nta-r.1	107767656	uncharacterized LOC107767656
osa-u.5	4347782	uncharacterized LOC4347782
zma-u.5	100281438	uncharacterized LOC100281438
zma-u.5	103633143	bromodomain-containing protein 4
tae-r.2	123104727	bromodomain-containing protein DDB_G0270170
tae-r.2	123113016	bromodomain-containing protein 3
tae-r.2	123122526	serine/arginine repetitive matrix protein 1
hvu-r.1	123451862	uncharacterized LOC123451862
sbi-r.1	8074166	uncharacterized LOC8074166
bdi-r.1	100832040	bromodomain-containing protein 7
bdi-r.1	100827623	uncharacterized LOC100827623
cre-r.1	CHLRE_17g711100v5	uncharacterized protein

Top 50 coexpressed genes to 107929268 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107929268 (ghi-r.1 coexpression data)

CoexMap"107929268"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03082 [list] [network] ATP-dependent chromatin remodeling (185 genes)

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(10797 genes)

IEA

Protein

XP_016716138.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for XP_016716138.1)

Subcellular
localization
TargetP

other 8

(predict for XP_016716138.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107929268	ghi-r.1 for 107920924	ghi-r.1 for 107905723	ghi-r.1 for 107905759	ath-u.5 for AT1G20670	ath-u.5 for AT1G76380	bra-r.6 for 103835784	bra-r.6 for 103832095	bra-r.6 for 103872856	bna-r.1 for 125586901	bna-r.1 for 106421665	bna-r.1 for 106406353	cit-r.1 for 102614471	cit-r.1 for 102619091	gma-u.5 for 100783010	gma-u.5 for 100811115	vvi-u.5 for 100245230	vvi-u.5 for 100244510	ppo-u.5 for 18098152	ppo-u.5 for 7485641	ppo-u.5 for 7474893	mtr-u.5 for 25490319	sly-u.5 for 101247829	sly-u.5 for 101253085	sot-r.1 for 102600883	sot-r.1 for 102592615	nta-r.1 for 107824075	nta-r.1 for 107769129	nta-r.1 for 107767656	osa-u.5 for 4347782	zma-u.5 for 100281438	zma-u.5 for 103633143	tae-r.2 for 123104727	tae-r.2 for 123113016	tae-r.2 for 123122526	hvu-r.1 for 123451862	sbi-r.1 for 8074166	bdi-r.1 for 100832040	bdi-r.1 for 100827623	cre-r.1 for CHLRE_17g711100v5

Ortholog

Ortholog ID: 3279

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

bromodomain and WD repeat-containing protein 1

bromodomain-containing protein DDB_G0270170

bromodomain-containing protein 7

DNA-binding bromodomain-containing protein

transcription factor GTE4

bromodomain-containing protein 9

uncharacterized LOC106411387

bromodomain-containing protein 9

transcription factor GTE4

uncharacterized LOC102614471

uncharacterized LOC102619091

uncharacterized LOC100783010

uncharacterized LOC100811115

uncharacterized LOC100245230

uncharacterized LOC100244510

uncharacterized LOC7485641

uncharacterized LOC7474893

uncharacterized LOC7474571

ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800

uncharacterized LOC101247829

uncharacterized LOC101253085

uncharacterized LOC102600883

uncharacterized LOC102592615

uncharacterized LOC107824075

uncharacterized LOC107769129

uncharacterized LOC107767656

uncharacterized LOC4347782

uncharacterized LOC100281438

bromodomain-containing protein 4

bromodomain-containing protein DDB_G0270170

bromodomain-containing protein 3

serine/arginine repetitive matrix protein 1

uncharacterized LOC123451862

uncharacterized LOC8074166

bromodomain-containing protein 7

uncharacterized LOC100827623

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	4
ghi03082	ATP-dependent chromatin remodeling	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	7
ghi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	7
ghi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	3
bra02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	3
bra02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna03420	Nucleotide excision repair	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna03420	Nucleotide excision repair	2
bna03460	Fanconi anemia pathway	2
bna04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2
vvi03040	Spliceosome	2
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta00900	Terpenoid backbone biosynthesis	2
nta03082	ATP-dependent chromatin remodeling	2
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	2
nta03082	ATP-dependent chromatin remodeling	2
nta04075	Plant hormone signal transduction	2
nta00051	Fructose and mannose metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	4
tae03272	Virion - Hepatitis viruses	4
tae04144	Endocytosis	4
tae03015	mRNA surveillance pathway	2
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00071	Fatty acid degradation	2
bdi01212	Fatty acid metabolism	2
bdi04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

107920924

107910682

107939997

838655

843970

103835784

103832095

103872856

106411387

106421371

106440731

102614471

102619091

100783010

100811115

100245230

100244510

7485641

7474893

7474571

25490319

101247829

101253085

102600883

102592615

107824075

107769129

107767656

4347782

100281438

103633143

123104727

123113016

123122526

123451862

8074166

100832040

100827623

66056955

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Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	2	2	2	3	1	2	2	3	1	2	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107929268 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107929268 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**