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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107932564   E3 ubiquitin-protein ligase UPL3 
 ghi-r.1   107928922   E3 ubiquitin-protein ligase UPL3 
 ghi-r.1   107923222   E3 ubiquitin-protein ligase UPL3 
 ghi-r.1   107921785   E3 ubiquitin-protein ligase UPL3 
 ath-u.5   KAK   HECT ubiquitin protein ligase family protein KAK 
 bra-r.6   103835175   E3 ubiquitin-protein ligase UPL3 
 bna-r.1   106389916   E3 ubiquitin-protein ligase UPL3 
 bna-r.1   106361540   E3 ubiquitin-protein ligase UPL3 
 cit-r.1   102606600   E3 ubiquitin-protein ligase UPL3 
 gma-u.5   100818972   E3 ubiquitin-protein ligase UPL3 
 gma-u.5   100804501   E3 ubiquitin-protein ligase UPL3 
 gma-u.5   100791450   E3 ubiquitin-protein ligase UPL3 
 vvi-u.5   100264024   E3 ubiquitin-protein ligase UPL3 
 vvi-u.5   100266125   E3 ubiquitin-protein ligase UPL3 
 ppo-u.5   7494248   E3 ubiquitin-protein ligase UPL3 
 ppo-u.5   7453645   E3 ubiquitin-protein ligase UPL3 
 mtr-u.5   11439680   E3 ubiquitin-protein ligase UPL3 
 sly-u.5   101264868   E3 ubiquitin-protein ligase UPL3 
 sly-u.5   101247472   E3 ubiquitin-protein ligase UPL3 
 sot-r.1   102603044   E3 ubiquitin-protein ligase UPL3-like 
 sot-r.1   102598003   E3 ubiquitin-protein ligase UPL3 
 nta-r.1   107798409   E3 ubiquitin-protein ligase UPL3 
 nta-r.1   107782760   E3 ubiquitin-protein ligase UPL3 
 nta-r.1   107767217   E3 ubiquitin-protein ligase UPL3 
 zma-u.5   103646651   E3 ubiquitin-protein ligase UPL3 
 zma-u.5   103626504   uncharacterized LOC103626504 
 tae-r.2   123135374   E3 ubiquitin-protein ligase UPL3 
 tae-r.2   123043381   E3 ubiquitin-protein ligase UPL3 
 tae-r.2   123131563   E3 ubiquitin-protein ligase UPL3 
 hvu-r.1   123401995   E3 ubiquitin-protein ligase UPL3-like 
 hvu-r.1   123424533   E3 ubiquitin-protein ligase UPL3-like 
 sbi-r.1   8085752   E3 ubiquitin-protein ligase UPL3 
 sbi-r.1   8066469   E3 ubiquitin-protein ligase UPL3 
 bdi-r.1   100826319   E3 ubiquitin-protein ligase UPL3 
 bdi-r.1   100826048   E3 ubiquitin-protein ligase UPL3 
 cre-r.1   CHLRE_07g312900v5   uncharacterized protein 

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Top 50 coexpressed genes to 107932564 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107932564 (ghi-r.1 coexpression data)

CoexMap"107932564"


ghiLOC107932564 | Entrez gene ID : 107932564    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta zma tae hvu sbi bdi cre osa
Paralog 4 1 1 2 1 3 2 2 1 2 2 3 2 3 2 2 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi04120 [list] [network] Ubiquitin mediated proteolysis (368 genes)
GO BP
GO:0000209 [list] [network] protein polyubiquitination  (192 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (406 genes)  IEA  
GO CC
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (513 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016720099.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  nucl_plas 4,  plas 2,  cyto 1,  cysk 1  (predict for XP_016720099.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_016720099.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107932564
ghi-r.1
for
107928922
ghi-r.1
for
107923222
ghi-r.1
for
107921785
ath-u.5
for
KAK
bra-r.6
for
103835175
bna-r.1
for
106389916
bna-r.1
for
106361540
cit-r.1
for
102606600
gma-u.5
for
100818972
gma-u.5
for
100804501
gma-u.5
for
100791450
vvi-u.5
for
100264024
vvi-u.5
for
100266125
ppo-u.5
for
7494248
ppo-u.5
for
7453645
mtr-u.5
for
11439680
sly-u.5
for
101264868
sly-u.5
for
101247472
sot-r.1
for
102603044
sot-r.1
for
102598003
nta-r.1
for
107798409
nta-r.1
for
107782760
nta-r.1
for
107767217
zma-u.5
for
103646651
zma-u.5
for
103626504
tae-r.2
for
123135374
tae-r.2
for
123043381
tae-r.2
for
123131563
hvu-r.1
for
123401995
hvu-r.1
for
123424533
sbi-r.1
for
8085752
sbi-r.1
for
8066469
bdi-r.1
for
100826319
bdi-r.1
for
100826048
cre-r.1
for
CHLRE_07g312900v5


Ortholog ID: 4601
Species ghi ghi ghi ath bra bna bna cit gma gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta nta zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107928922 LOC107923222 LOC107921785 KAK LOC103835175 LOC106389916 LOC106361540 LOC102606600 LOC100818972 LOC100804501 LOC100791450 LOC100264024 LOC100266125 LOC7494248 LOC7453645 LOC11439680 LOC101264868 LOC101247472 LOC102603044 LOC102598003 LOC107798409 LOC107782760 LOC107763564 LOC103646651 LOC103626504 LOC123135374 LOC123043381 LOC123187208 LOC123401995 LOC123424533 LOC8085752 LOC8066469 LOC100826319 LOC100826048 CHLRE_07g312900v5
Function* E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 HECT ubiquitin protein ligase family protein KAK E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3-like E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3-like E3 ubiquitin-protein ligase UPL3 uncharacterized LOC103626504 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3-like E3 ubiquitin-protein ligase UPL3-like E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 E3 ubiquitin-protein ligase UPL3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi04141 Protein processing in endoplasmic reticulum 3
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi04141 Protein processing in endoplasmic reticulum 3
ghi02010 ABC transporters 2
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 5
ghi04141 Protein processing in endoplasmic reticulum 3
ghi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna00020 Citrate cycle (TCA cycle) 2
bna00785 Lipoic acid metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna00020 Citrate cycle (TCA cycle) 2
bna00785 Lipoic acid metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
sot00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma03018 RNA degradation 2
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 6
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 5
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107928922 107923222 107921785 830017 103835175 106389916 106361540 102606600 100818972 100804501 100791450 100264024 100266125 7494248 7453645 11439680 101264868 101247472 102603044 102598003 107798409 107782760 107763564 103646651 103626504 123135374 123043381 123187208 123401995 123424533 8085752 8066469 100826319 100826048 5726328
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