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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107934420   serine/arginine-rich SC35-like splicing factor SCL30 
 ghi-r.1   107962023   serine/arginine-rich SC35-like splicing factor SCL30 
 ghi-r.1   107900471   serine/arginine-rich SC35-like splicing factor SCL30 
 ath-u.5   SCL30   SC35-like splicing factor 30 
 bna-r.1   106357595   serine/arginine-rich SC35-like splicing factor SCL30 
 bna-r.1   106445359   serine/arginine-rich SC35-like splicing factor SCL30 
 cit-r.1   102625092   serine/arginine-rich SC35-like splicing factor SCL30 
 gma-u.5   100804294   serine/arginine-rich SC35-like splicing factor SCL30 
 gma-u.5   100792397   serine/arginine-rich SC35-like splicing factor SCL30 
 vvi-u.5   100258210   serine/arginine-rich SC35-like splicing factor SCL30 
 ppo-u.5   7458142   serine/arginine-rich SC35-like splicing factor SCL30 
 ppo-u.5   7467550   serine/arginine-rich SC35-like splicing factor SCL30 
 mtr-u.5   11433183   serine/arginine-rich SC35-like splicing factor SCL30 
 osa-u.5   107275752   serine/arginine-rich SC35-like splicing factor SCL30 
 osa-u.5   4328900   serine/arginine-rich SC35-like splicing factor SCL30 
 zma-u.5   100283836   uncharacterized LOC100283836 
 zma-u.5   100193775   uncharacterized LOC100193775 
 tae-r.2   123087284   serine/arginine-rich SC35-like splicing factor SCL30 
 tae-r.2   123090669   serine/arginine-rich SC35-like splicing factor SCL30 
 tae-r.2   123102480   serine/arginine-rich SC35-like splicing factor SCL30 
 hvu-r.1   123400214   serine/arginine-rich SC35-like splicing factor SCL30 
 sbi-r.1   8155680   serine/arginine-rich SC35-like splicing factor SCL30 
 sbi-r.1   8086033   serine/arginine-rich SC35-like splicing factor SCL30 
 bdi-r.1   100826288   serine/arginine-rich SC35-like splicing factor SCL30 

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Top 50 coexpressed genes to 107934420 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107934420 (ghi-r.1 coexpression data)

CoexMap"107934420"


ghiLOC107934420 | Entrez gene ID : 107934420    
Species ghi ath bna cit gma vvi ppo mtr osa zma tae hvu sbi bdi sot sly nta cre bra
Paralog 3 1 2 1 2 1 2 1 2 2 3 1 2 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (384 genes)  IEA  
GO CC
GO:0016607 [list] [network] nuclear speck  (38 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016722337.2 [sequence] [blastp]
XP_040959535.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  mito 1,  plas 1,  extr 1,  mito_plas 1  (predict for XP_016722337.2)
nucl 8,  mito 1,  plas 1,  extr 1,  mito_plas 1  (predict for XP_040959535.1)
Subcellular
localization
TargetP
mito 8,  other 4  (predict for XP_016722337.2)
mito 8,  other 4  (predict for XP_040959535.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107934420
ghi-r.1
for
107962023
ghi-r.1
for
107900471
ath-u.5
for
SCL30
bna-r.1
for
106357595
bna-r.1
for
106445359
cit-r.1
for
102625092
gma-u.5
for
100804294
gma-u.5
for
100792397
vvi-u.5
for
100258210
ppo-u.5
for
7458142
ppo-u.5
for
7467550
mtr-u.5
for
11433183
osa-u.5
for
107275752
osa-u.5
for
4328900
zma-u.5
for
100283836
zma-u.5
for
100193775
tae-r.2
for
123087284
tae-r.2
for
123090669
tae-r.2
for
123102480
hvu-r.1
for
123400214
sbi-r.1
for
8155680
sbi-r.1
for
8086033
bdi-r.1
for
100826288


Ortholog ID: 6586
Species ghi ghi ghi ath bna bna cit gma gma vvi ppo ppo mtr osa osa zma zma tae tae tae hvu hvu sbi sbi bdi
Symbol LOC107934420 LOC107962023 LOC107900471 SCL30 LOC106357595 LOC106445359 LOC102625092 LOC100804294 LOC100792397 LOC100258210 LOC7458142 LOC7467550 LOC11433183 LOC107275752 LOC4328900 LOC100283836 LOC100193775 LOC123102480 LOC123110686 LOC123119693 LOC123400214 LOC123447127 LOC8155680 LOC8086033 LOC100826288
Function* serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 SC35-like splicing factor 30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 uncharacterized LOC100283836 uncharacterized LOC100193775 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 8
bna03040 Spliceosome 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 8
bna03040 Spliceosome 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 10
gma03015 mRNA surveillance pathway 4
gma03013 Nucleocytoplasmic transport 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 10
ppo03040 Spliceosome 4
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr04144 Endocytosis 4
mtr03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03022 Basal transcription factors 3
osa03015 mRNA surveillance pathway 2
osa03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae00561 Glycerolipid metabolism 2
tae00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 4
hvu04141 Protein processing in endoplasmic reticulum 4
hvu03083 Polycomb repressive complex 3
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03060 Protein export 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107934420 107962023 107900471 824712 106357595 106445359 102625092 100804294 100792397 100258210 7458142 7467550 11433183 107275752 4328900 100283836 100193775 123102480 123110686 123119693 123400214 123447127 8155680 8086033 100826288
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