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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7467550   serine/arginine-rich SC35-like splicing factor SCL30 
 ppo-r.4   7467550   serine/arginine-rich SC35-like splicing factor SCL30 
 ppo-m.4   7467550   serine/arginine-rich SC35-like splicing factor SCL30 
 ppo-u.5   7458142   serine/arginine-rich SC35-like splicing factor SCL30 
 gma-u.5   100804294   serine/arginine-rich SC35-like splicing factor SCL30 
 gma-u.5   100792397   serine/arginine-rich SC35-like splicing factor SCL30 
 mtr-u.5   11433183   serine/arginine-rich SC35-like splicing factor SCL30 
 ath-u.5   SCL30   SC35-like splicing factor 30 
 vvi-u.5   100258210   serine/arginine-rich SC35-like splicing factor SCL30 
 osa-u.5   107275752   serine/arginine-rich SC35-like splicing factor SCL30 
 osa-u.5   4328900   serine/arginine-rich SC35-like splicing factor SCL30 
 zma-u.5   100193775   uncharacterized LOC100193775 
 zma-u.5   100283836   uncharacterized LOC100283836 

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Top 50 coexpressed genes to 7467550 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7467550 (ppo-u.5 coexpression data)

CoexMap"7467550"


ppoLOC7467550 | Entrez gene ID : 7467550    
Species ppo gma mtr ath vvi osa zma sly sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_006379596.2 [sequence] [blastp]
XP_024461751.1 [sequence] [blastp]
XP_024461752.1 [sequence] [blastp]
XP_024461753.1 [sequence] [blastp]
XP_024461754.1 [sequence] [blastp]
XP_024461756.1 [sequence] [blastp]
XP_052311488.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  mito 1,  extr 1  (predict for XP_006379596.2)
nucl 4,  chlo 3,  mito 1,  extr 1  (predict for XP_024461751.1)
nucl 4,  chlo 3,  mito 1,  extr 1  (predict for XP_024461752.1)
nucl 4,  chlo 3,  mito 1,  extr 1  (predict for XP_024461753.1)
nucl 4,  chlo 3,  mito 1,  extr 1  (predict for XP_024461754.1)
nucl 4,  chlo 3,  mito 1,  extr 1  (predict for XP_024461756.1)
nucl 4,  chlo 3,  mito 1,  extr 1  (predict for XP_052311488.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_006379596.2)
mito 6  (predict for XP_024461751.1)
mito 6  (predict for XP_024461752.1)
mito 6  (predict for XP_024461753.1)
mito 6  (predict for XP_024461754.1)
mito 6  (predict for XP_024461756.1)
mito 6  (predict for XP_052311488.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7467550

.
ppo-r.4
for
7467550

.
ppo-m.4
for
7467550

.
ppo-u.5
for
7458142

.
gma-u.5
for
100804294

.
gma-u.5
for
100792397

.
mtr-u.5
for
11433183

.
ath-u.5
for
SCL30

.
vvi-u.5
for
100258210

.
osa-u.5
for
107275752

.
osa-u.5
for
4328900

.
zma-u.5
for
100193775

.
zma-u.5
for
100283836

.


Ortholog ID: 6586
Species ath gma gma osa osa zma zma vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sbi cit bdi
Symbol SCL30 LOC100792397 LOC100804294 LOC4328900 LOC107275752 LOC100283836 LOC100193775 LOC100258210 LOC7467550 LOC7458142 LOC11433183 LOC123102480 LOC123110686 LOC123400214 LOC123447127 LOC107900471 LOC107962023 LOC106445359 LOC106357595 LOC8086033 LOC8155680 LOC102625092 LOC100826288
Function* SC35-like splicing factor 30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 uncharacterized LOC100283836 uncharacterized LOC100193775 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30 serine/arginine-rich SC35-like splicing factor SCL30
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 10
gma03015 mRNA surveillance pathway 4
gma03013 Nucleocytoplasmic transport 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03022 Basal transcription factors 3
osa03015 mRNA surveillance pathway 2
osa03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03013 Nucleocytoplasmic transport 4
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 10
ppo03040 Spliceosome 4
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr04144 Endocytosis 4
mtr03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 4
hvu04141 Protein processing in endoplasmic reticulum 4
hvu03083 Polycomb repressive complex 3
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 8
bna03040 Spliceosome 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 8
bna03040 Spliceosome 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03060 Protein export 2
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824712 100792397 100804294 4328900 107275752 100283836 100193775 100258210 7467550 7458142 11433183 123102480 123110686 123400214 123447127 107900471 107962023 106445359 106357595 8086033 8155680 102625092 100826288
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