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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107936246   serine/threonine-protein phosphatase PP1 isozyme 2 
 ghi-r.1   107949500   serine/threonine-protein phosphatase PP1 
 ghi-r.1   107940543   serine/threonine-protein phosphatase PP1 isozyme 2 
 ghi-r.1   107936665   serine/threonine-protein phosphatase PP1 isozyme 4 
 ath-u.5   TOPP6   type one serine/threonine protein phosphatase 6 
 ath-u.5   TOPP3   type one serine/threonine protein phosphatase 3 
 ath-u.5   TOPP2   type one serine/threonine protein phosphatase 2 
 bra-r.6   103833886   serine/threonine-protein phosphatase PP1 isozyme 6 
 bra-r.6   103838234   serine/threonine-protein phosphatase PP1 isozyme 3 
 bra-r.6   103845343   serine/threonine-protein phosphatase PP1 isozyme 2 
 bna-r.1   111203405   serine/threonine-protein phosphatase PP1 isozyme 9 
 bna-r.1   125606367   serine/threonine-protein phosphatase PP1 isozyme 9-like 
 bna-r.1   125575131   serine/threonine-protein phosphatase PP1 isozyme 9-like 
 cit-r.1   102617266   serine/threonine-protein phosphatase PP1 
 cit-r.1   102613210   serine/threonine-protein phosphatase PP1-like 
 gma-u.5   100807069   serine/threonine-protein phosphatase PP1 isozyme 4-like 
 gma-u.5   100808597   serine/threonine-protein phosphatase PP1 
 gma-u.5   100811593   serine/threonine-protein phosphatase PP1 isozyme 4-like 
 vvi-u.5   100250219   serine/threonine-protein phosphatase PP1 
 vvi-u.5   100240794   serine/threonine-protein phosphatase PP1 isozyme 3 
 vvi-u.5   100240815   serine/threonine-protein phosphatase PP1 
 ppo-u.5   7458113   serine/threonine-protein phosphatase PP1 isozyme 4 
 ppo-u.5   18101604   serine/threonine-protein phosphatase PP1 isozyme 3 
 mtr-u.5   11424441   serine/threonine-protein phosphatase PP1 isozyme 3 
 mtr-u.5   11406064   serine/threonine-protein phosphatase PP1 isozyme 4 
 sly-u.5   101258308   serine/threonine-protein phosphatase PP1 
 sly-u.5   101254698   serine/threonine-protein phosphatase PP1 isozyme 3 
 sly-u.5   101251329   serine/threonine-protein phosphatase PP1 
 sot-r.1   102590224   serine/threonine-protein phosphatase PP1-like 
 sot-r.1   102583934   serine/threonine-protein phosphatase PP1 
 sot-r.1   102602508   serine/threonine-protein phosphatase PP1 isozyme 2 
 nta-r.1   107821178   serine/threonine-protein phosphatase PP1 isozyme 9 
 nta-r.1   107759298   serine/threonine-protein phosphatase PP1-like 
 nta-r.1   107759017   serine/threonine-protein phosphatase PP1 isozyme 3-like 
 osa-u.5   4326473   serine/threonine-protein phosphatase PP1 
 osa-u.5   4331166   serine/threonine-protein phosphatase PP1 
 zma-u.5   103635487   serine/threonine-protein phosphatase PP1 
 zma-u.5   100272981   Serine/threonine-protein phosphatase PP1 isozyme 2 
 zma-u.5   100282306   serine/threonine-protein phosphatase PP1 
 tae-r.2   123113707   serine/threonine-protein phosphatase PP1 
 tae-r.2   123085402   serine/threonine-protein phosphatase PP1 
 hvu-r.1   123449051   serine/threonine-protein phosphatase PP1 
 hvu-r.1   123443630   serine/threonine-protein phosphatase PP1-like 
 hvu-r.1   123442731   serine/threonine-protein phosphatase alpha-3 isoform-like 
 sbi-r.1   8084952   serine/threonine-protein phosphatase PP1 
 sbi-r.1   8069536   serine/threonine-protein phosphatase PP1 
 sbi-r.1   8075330   serine/threonine-protein phosphatase PP1 
 bdi-r.1   100822417   serine/threonine-protein phosphatase PP1 
 bdi-r.1   100827362   serine/threonine-protein phosphatase alpha-3 isoform 
 bdi-r.1   100829796   serine/threonine-protein phosphatase PP1 
 cre-r.1   CHLRE_06g292550v5   uncharacterized protein 

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Top 50 coexpressed genes to 107936246 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107936246 (ghi-r.1 coexpression data)

CoexMap"107936246"


ghiLOC107936246 | Entrez gene ID : 107936246    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 3 2 2 3 3 3 2 3 2 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03015 [list] [network] mRNA surveillance pathway (365 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004722 [list] [network] protein serine/threonine phosphatase activity  (301 genes)  IEA  
Protein XP_016724427.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  plas 1,  pero 1,  golg 1,  cysk_nucl 1,  golg_plas 1  (predict for XP_016724427.2)
Subcellular
localization
TargetP
other 9  (predict for XP_016724427.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107936246
ghi-r.1
for
107949500
ghi-r.1
for
107940543
ghi-r.1
for
107936665
ath-u.5
for
TOPP6
ath-u.5
for
TOPP3
ath-u.5
for
TOPP2
bra-r.6
for
103833886
bra-r.6
for
103838234
bra-r.6
for
103845343
bna-r.1
for
111203405
bna-r.1
for
125606367
bna-r.1
for
125575131
cit-r.1
for
102617266
cit-r.1
for
102613210
gma-u.5
for
100807069
gma-u.5
for
100808597
gma-u.5
for
100811593
vvi-u.5
for
100250219
vvi-u.5
for
100240794
vvi-u.5
for
100240815
ppo-u.5
for
7458113
ppo-u.5
for
18101604
mtr-u.5
for
11424441
mtr-u.5
for
11406064
sly-u.5
for
101258308
sly-u.5
for
101254698
sly-u.5
for
101251329
sot-r.1
for
102590224
sot-r.1
for
102583934
sot-r.1
for
102602508
nta-r.1
for
107821178
nta-r.1
for
107759298
nta-r.1
for
107759017
osa-u.5
for
4326473
osa-u.5
for
4331166
zma-u.5
for
103635487
zma-u.5
for
100272981
zma-u.5
for
100282306
tae-r.2
for
123113707
tae-r.2
for
123085402
hvu-r.1
for
123449051
hvu-r.1
for
123443630
hvu-r.1
for
123442731
sbi-r.1
for
8084952
sbi-r.1
for
8069536
sbi-r.1
for
8075330
bdi-r.1
for
100822417
bdi-r.1
for
100827362
bdi-r.1
for
100829796
cre-r.1
for
CHLRE_06g292550v5


Ortholog ID: 188
Species ghi ghi ath ath ath bra bra bra bna bna bna cit cit cit gma gma gma vvi vvi vvi ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae hvu hvu sbi sbi bdi bdi bdi cre
Symbol LOC107952129 LOC107906581 TOPP6 TOPP5 TOPP9 LOC103873291 LOC103827974 LOC103856650 LOC106366228 LOC106387225 LOC106388742 LOC102610810 LOC102611078 LOC102612516 LOC100811593 LOC100780047 LOC100783178 LOC100250219 LOC100258649 LOC100259840 LOC7458113 LOC7468609 LOC11431740 LOC11425683 LOC11432243 LOC101254698 LOC101251329 LOC101260053 LOC102590224 LOC102602508 LOC102590757 LOC107828780 LOC107822639 LOC107801901 LOC4326473 LOC4332369 LOC4340228 LOC103635487 LOC542269 LOC100284227 LOC123068691 LOC123180557 LOC123407142 LOC123399686 LOC8075330 LOC110434642 LOC100829796 LOC100841528 LOC100821631 CHLRE_06g292550v5
Function* serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 2 type one serine/threonine protein phosphatase 6 type one serine/threonine protein phosphatase 5 Calcineurin-like metallo-phosphoesterase superfamily protein serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 7 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 6-like serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 4-like serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1-like serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 isozyme 4 serine/threonine-protein phosphatase PP1 isozyme 1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 3 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 1 serine/threonine-protein phosphatase PP1-like serine/threonine-protein phosphatase PP1 isozyme 2 serine/threonine-protein phosphatase PP1 isozyme 3 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 isozyme 3 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1-like serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 ser/thr protein phosphatase 1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase alpha-3 isoform serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1-like serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 serine/threonine-protein phosphatase PP1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00562 Inositol phosphate metabolism 2
ath04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 5
ath04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna03015 mRNA surveillance pathway 4
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma00190 Oxidative phosphorylation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma04142 Lysosome 2
gma03013 Nucleocytoplasmic transport 2
gma00500 Starch and sucrose metabolism 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00061 Fatty acid biosynthesis 9
vvi01212 Fatty acid metabolism 8
vvi01240 Biosynthesis of cofactors 7
vvi00780 Biotin metabolism 6
vvi01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi04120 Ubiquitin mediated proteolysis 3
vvi04382 Cornified envelope formation 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03040 Spliceosome 3
ppo03015 mRNA surveillance pathway 2
ppo03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00020 Citrate cycle (TCA cycle) 4
sly01200 Carbon metabolism 4
sly03040 Spliceosome 4
sly00785 Lipoic acid metabolism 3
sly01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 3
sly03040 Spliceosome 3
sly03008 Ribosome biogenesis in eukaryotes 2
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 6
nta04016 MAPK signaling pathway - plant 4
nta04075 Plant hormone signal transduction 4
nta04136 Autophagy - other 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00940 Phenylpropanoid biosynthesis 2
nta03015 mRNA surveillance pathway 2
nta00740 Riboflavin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03015 mRNA surveillance pathway 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma03015 mRNA surveillance pathway 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
zma04120 Ubiquitin mediated proteolysis 2
zma04141 Protein processing in endoplasmic reticulum 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04075 Plant hormone signal transduction 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi01230 Biosynthesis of amino acids 3
bdi04016 MAPK signaling pathway - plant 2
bdi04075 Plant hormone signal transduction 2
bdi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03015 mRNA surveillance pathway 4
cre04382 Cornified envelope formation 3
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107952129 107906581 834356 823835 819724 103873291 103827974 103856650 106366228 106387225 106388742 102610810 102611078 102612516 100811593 100780047 100783178 100250219 100258649 100259840 7458113 7468609 11431740 11425683 11432243 101254698 101251329 101260053 102590224 102602508 102590757 107828780 107822639 107801901 4326473 4332369 4340228 103635487 542269 100284227 123068691 123180557 123407142 123399686 8075330 110434642 100829796 100841528 100821631 5727122
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