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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107938878   serine--tRNA ligase 
 ghi-r.1   107925486   serine--tRNA ligase 
 ghi-r.1   107922018   serine--tRNA ligase 
 ghi-r.1   107908581   serine--tRNA ligase 
 ath-u.5   AT5G27470   seryl-tRNA synthetase / serine-tRNA ligase 
 bra-r.6   103854660   serine--tRNA ligase, cytoplasmic 
 bna-r.1   125580790   serine--tRNA ligase, cytoplasmic-like 
 cit-r.1   102628712   serine--tRNA ligase 
 gma-u.5   100781350   serine--tRNA ligase 
 gma-u.5   100806082   serine--tRNA ligase 
 vvi-u.5   100261399   serine--tRNA ligase 
 ppo-u.5   7486390   serine--tRNA ligase 
 mtr-u.5   11426408   serine--tRNA ligase 
 sly-u.5   101263161   serine--tRNA ligase 
 sot-r.1   102580921   serine--tRNA ligase 
 sot-r.1   102589369   serine--tRNA ligase-like 
 nta-r.1   107788890   serine--tRNA ligase 
 nta-r.1   107798294   serine--tRNA ligase-like 
 osa-u.5   4324679   serine--tRNA ligase 
 zma-u.5   541989   seryl-tRNA synthetase 1 
 zma-u.5   109943264   serine--tRNA ligase 
 zma-u.5   100272738   seryl-tRNA synthetase 
 tae-r.2   123138463   serine--tRNA ligase, cytoplasmic 
 tae-r.2   123084935   serine--tRNA ligase 
 tae-r.2   123093111   serine--tRNA ligase 
 hvu-r.1   123449419   serine--tRNA ligase-like 
 hvu-r.1   123401774   serine--tRNA ligase-like 
 sbi-r.1   8054246   serine--tRNA ligase 
 bdi-r.1   100836441   serine--tRNA ligase 
 bdi-r.1   100833118   serine--tRNA ligase 
 cre-r.1   CHLRE_03g189400v5   uncharacterized protein 

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Top 50 coexpressed genes to 107938878 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107938878 (ghi-r.1 coexpression data)

CoexMap"107938878"


ghiLOC107938878 | Entrez gene ID : 107938878    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 1 1 1 2 1 1 1 1 2 2 1 3 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00970 [list] [network] Aminoacyl-tRNA biosynthesis (172 genes)
GO BP
GO:0006434 [list] [network] seryl-tRNA aminoacylation  (6 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:0004828 [list] [network] serine-tRNA ligase activity  (6 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (60 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (5155 genes)  IEA  
Protein XP_016727614.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  pero 4,  nucl 1  (predict for XP_016727614.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016727614.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107938878
ghi-r.1
for
107925486
ghi-r.1
for
107922018
ghi-r.1
for
107908581
ath-u.5
for
AT5G27470
bra-r.6
for
103854660
bna-r.1
for
125580790
cit-r.1
for
102628712
gma-u.5
for
100781350
gma-u.5
for
100806082
vvi-u.5
for
100261399
ppo-u.5
for
7486390
mtr-u.5
for
11426408
sly-u.5
for
101263161
sot-r.1
for
102580921
sot-r.1
for
102589369
nta-r.1
for
107788890
nta-r.1
for
107798294
osa-u.5
for
4324679
zma-u.5
for
541989
zma-u.5
for
109943264
zma-u.5
for
100272738
tae-r.2
for
123138463
tae-r.2
for
123084935
tae-r.2
for
123093111
hvu-r.1
for
123449419
hvu-r.1
for
123401774
sbi-r.1
for
8054246
bdi-r.1
for
100836441
bdi-r.1
for
100833118
cre-r.1
for
CHLRE_03g189400v5


Ortholog ID: 4131
Species ghi ghi ghi ath bra bra bna bna bna cit gma gma vvi ppo mtr sly sot sot nta nta osa zma zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC107938878 LOC107922018 LOC107908581 AT5G27470 LOC103854660 LOC103874527 LOC106409750 LOC106359044 LOC106348674 LOC102628712 LOC100781350 LOC100806082 LOC100261399 LOC7486390 LOC11426408 LOC101263161 LOC102580921 LOC102589369 LOC107788890 LOC107798294 LOC4324679 LOC541989 LOC100272738 LOC100279490 LOC123093111 LOC123098379 LOC123128590 LOC123449419 LOC123401774 LOC8054246 LOC100836441 LOC100833118 CHLRE_03g189400v5
Function* serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase seryl-tRNA synthetase / serine-tRNA ligase serine--tRNA ligase, cytoplasmic serine--tRNA ligase, cytoplasmic serine--tRNA ligase, cytoplasmic-like serine--tRNA ligase, cytoplasmic serine--tRNA ligase, cytoplasmic serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase-like serine--tRNA ligase serine--tRNA ligase-like serine--tRNA ligase seryl-tRNA synthetase 1 seryl-tRNA synthetase serine--tRNA ligase, cytoplasmic serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase, cytoplasmic serine--tRNA ligase-like serine--tRNA ligase-like serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03010 Ribosome 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot00230 Purine metabolism 2
sot00250 Alanine, aspartate and glutamate metabolism 2
sot01232 Nucleotide metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 3
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi00300 Lysine biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 7
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 7
bdi00900 Terpenoid backbone biosynthesis 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 9
cre01230 Biosynthesis of amino acids 3
cre00260 Glycine, serine and threonine metabolism 2
cre00270 Cysteine and methionine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107938878 107922018 107908581 832806 103854660 103874527 106409750 106359044 106348674 102628712 100781350 100806082 100261399 7486390 11426408 101263161 102580921 102589369 107788890 107798294 4324679 541989 100272738 100279490 123093111 123098379 123128590 123449419 123401774 8054246 100836441 100833118 5717502
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