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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g189400v5   uncharacterized protein 
 ath-u.5   AT5G27470   seryl-tRNA synthetase / serine-tRNA ligase 
 gma-u.5   100806082   serine--tRNA ligase 
 gma-u.5   100781350   serine--tRNA ligase 
 sly-u.5   101263161   serine--tRNA ligase 
 osa-u.5   4324679   serine--tRNA ligase 
 zma-u.5   100279490   serine--tRNA ligase, cytoplasmic 
 zma-u.5   100272738   seryl-tRNA synthetase 
 zma-u.5   541989   seryl-tRNA synthetase 1 
 vvi-u.5   100261399   serine--tRNA ligase 
 ppo-u.5   7486390   serine--tRNA ligase 
 mtr-u.5   11426408   serine--tRNA ligase 

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Top 50 coexpressed genes to CHLRE_03g189400v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g189400v5 (cre-r.1 coexpression data)

CoexMap"5717502"


creCHLRE_03g189400v5 | Entrez gene ID : 5717502      
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 1 2 1 1 3 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre00970 [list] [network] Aminoacyl-tRNA biosynthesis (65 genes)
GO BP
GO:0006434 [list] [network] seryl-tRNA aminoacylation  (3 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (481 genes)  IEA  
GO MF
GO:0004828 [list] [network] serine-tRNA ligase activity  (3 genes)  IEA  
GO:0000049 [list] [network] tRNA binding  (34 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_001692030.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 2,  mito 1  (predict for XP_001692030.1)
Subcellular
localization
TargetP
other 8  (predict for XP_001692030.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g189400v5

.
ath-u.5
for
AT5G27470

.
gma-u.5
for
100806082

.
gma-u.5
for
100781350

.
sly-u.5
for
101263161

.
osa-u.5
for
4324679

.
zma-u.5
for
100279490

.
zma-u.5
for
100272738

.
zma-u.5
for
541989

.
vvi-u.5
for
100261399

.
ppo-u.5
for
7486390

.
mtr-u.5
for
11426408

.


Ortholog ID: 4131
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol AT5G27470 LOC100781350 LOC100806082 LOC101263161 LOC4324679 LOC541989 LOC100272738 LOC103854660 LOC100261399 LOC7486390 LOC11426408 LOC123098379 LOC123128590 LOC123401774 LOC123449419 LOC107938878 LOC107922018 LOC106359044 LOC106409750 CHLRE_03g189400v5 LOC8054246 LOC102580921 LOC102589369 LOC102628712 LOC100836441 LOC100833118 LOC107798294 LOC107788890
Function* seryl-tRNA synthetase / serine-tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase seryl-tRNA synthetase 1 seryl-tRNA synthetase serine--tRNA ligase, cytoplasmic serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase, cytoplasmic serine--tRNA ligase-like serine--tRNA ligase-like serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase, cytoplasmic serine--tRNA ligase, cytoplasmic-like uncharacterized protein serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase-like serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase serine--tRNA ligase-like serine--tRNA ligase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03010 Ribosome 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 9
cre01230 Biosynthesis of amino acids 3
cre00260 Glycine, serine and threonine metabolism 2
cre00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi00300 Lysine biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 10
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot00230 Purine metabolism 2
sot00250 Alanine, aspartate and glutamate metabolism 2
sot01232 Nucleotide metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 7
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 7
bdi00900 Terpenoid backbone biosynthesis 2
bdi01200 Carbon metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 3
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832806 100781350 100806082 101263161 4324679 541989 100272738 103854660 100261399 7486390 11426408 123098379 123128590 123401774 123449419 107938878 107922018 106359044 106409750 5717502 8054246 102580921 102589369 102628712 100836441 100833118 107798294 107788890
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