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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107939474   DNA-directed RNA polymerases II and IV subunit 5A 
 ghi-r.1   107949695   DNA-directed RNA polymerases II and IV subunit 5A 
 ghi-r.1   107932797   DNA-directed RNA polymerases II and IV subunit 5A 
 ghi-r.1   107930778   DNA-directed RNA polymerases II and IV subunit 5A 
 ath-u.5   NRPB5   Eukaryotic rpb5 RNA polymerase subunit family protein 
 bra-r.6   103859952   DNA-directed RNA polymerases II and IV subunit 5A 
 bra-r.6   103869090   DNA-directed RNA polymerases II and IV subunit 5A 
 bna-r.1   106356712   DNA-directed RNA polymerases II and IV subunit 5A 
 bna-r.1   106366939   DNA-directed RNA polymerases II and IV subunit 5A 
 bna-r.1   106418028   DNA-directed RNA polymerases II and IV subunit 5A 
 cit-r.1   102629940   DNA-directed RNA polymerases II and IV subunit 5A 
 gma-u.5   100499667   uncharacterized LOC100499667 
 gma-u.5   100306098   uncharacterized LOC100306098 
 vvi-u.5   100259318   DNA-directed RNA polymerases II and IV subunit 5A 
 ppo-u.5   18100431   DNA-directed RNA polymerases II and IV subunit 5A 
 mtr-u.5   11438657   DNA-directed RNA polymerases II and IV subunit 5A 
 mtr-u.5   11426241   DNA-directed RNA polymerases II and IV subunit 5A 
 mtr-u.5   11407830   DNA-directed RNA polymerases II and IV subunit 5A 
 sly-u.5   104646151   DNA-directed RNA polymerases II and IV subunit 5A 
 sly-u.5   101249921   DNA-directed RNA polymerases II and IV subunit 5A 
 sot-r.1   102590791   DNA-directed RNA polymerases II and IV subunit 5A-like 
 sot-r.1   102597013   DNA-directed RNA polymerases II and IV subunit 5A-like 
 nta-r.1   107773718   DNA-directed RNA polymerases II and IV subunit 5A-like 
 nta-r.1   107766974   DNA-directed RNA polymerases II and IV subunit 5A 
 nta-r.1   107810407   DNA-directed RNA polymerases II and IV subunit 5A-like 
 osa-u.5   4327549   DNA-directed RNA polymerases II and IV subunit 5A 
 osa-u.5   9270850   DNA-directed RNA polymerases II and IV subunit 5A 
 zma-u.5   100273250   uncharacterized LOC100273250 
 zma-u.5   100193880   DNA-directed RNA polymerases II and IV subunit 5A 
 tae-r.2   123045828   DNA-directed RNA polymerases II and IV subunit 5A 
 tae-r.2   123045827   DNA-directed RNA polymerases II and IV subunit 5A 
 tae-r.2   123053714   DNA-directed RNA polymerases II and IV subunit 5A 
 hvu-r.1   123427064   DNA-directed RNA polymerases II and IV subunit 5A-like 
 hvu-r.1   123427065   DNA-directed RNA polymerases II and IV subunit 5A-like 
 hvu-r.1   123444642   DNA-directed RNA polymerases II and IV subunit 5A-like 
 sbi-r.1   110436107   DNA-directed RNA polymerases II and IV subunit 5A-like 
 sbi-r.1   110433983   DNA-directed RNA polymerases II and IV subunit 5A-like 
 bdi-r.1   100844964   DNA-directed RNA polymerases II and IV subunit 5A 
 bdi-r.1   100831395   DNA-directed RNA polymerases II and IV subunit 5A 
 cre-r.1   CHLRE_09g403219v5   uncharacterized protein 

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Top 50 coexpressed genes to 107939474 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107939474 (ghi-r.1 coexpression data)

CoexMap"107939474"


ghiLOC107939474 | Entrez gene ID : 107939474    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 1 2 1 1 3 2 2 3 2 2 3 3 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03020 [list] [network] RNA polymerase (126 genes)
ghi03420 [list] [network] Nucleotide excision repair (188 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (617 genes)  IEA  
GO CC
GO:0005736 [list] [network] RNA polymerase I complex  (62 genes)  IEA  
GO:0005665 [list] [network] RNA polymerase II, core complex  (68 genes)  IEA  
GO:0005666 [list] [network] RNA polymerase III complex  (77 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016728299.1 [sequence] [blastp]
XP_016728300.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 1,  pero 1,  chlo 1,  mito 1,  extr 1,  E.R. 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016728299.1)
cyto 4,  nucl 1,  pero 1,  chlo 1,  mito 1,  extr 1,  E.R. 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016728300.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016728299.1)
other 8  (predict for XP_016728300.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107939474
ghi-r.1
for
107949695
ghi-r.1
for
107932797
ghi-r.1
for
107930778
ath-u.5
for
NRPB5
bra-r.6
for
103859952
bra-r.6
for
103869090
bna-r.1
for
106356712
bna-r.1
for
106366939
bna-r.1
for
106418028
cit-r.1
for
102629940
gma-u.5
for
100499667
gma-u.5
for
100306098
vvi-u.5
for
100259318
ppo-u.5
for
18100431
mtr-u.5
for
11438657
mtr-u.5
for
11426241
mtr-u.5
for
11407830
sly-u.5
for
104646151
sly-u.5
for
101249921
sot-r.1
for
102590791
sot-r.1
for
102597013
nta-r.1
for
107773718
nta-r.1
for
107766974
nta-r.1
for
107810407
osa-u.5
for
4327549
osa-u.5
for
9270850
zma-u.5
for
100273250
zma-u.5
for
100193880
tae-r.2
for
123045828
tae-r.2
for
123045827
tae-r.2
for
123053714
hvu-r.1
for
123427064
hvu-r.1
for
123427065
hvu-r.1
for
123444642
sbi-r.1
for
110436107
sbi-r.1
for
110433983
bdi-r.1
for
100844964
bdi-r.1
for
100831395
cre-r.1
for
CHLRE_09g403219v5


Ortholog ID: 2647
Species ghi ghi ghi ath bra bra bna bna bna cit gma gma vvi ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi cre
Symbol LOC107949695 LOC107932797 LOC107932939 NRPB5 LOC103859952 LOC103869090 LOC106418028 LOC106439634 LOC125600349 LOC102629940 LOC100499667 LOC100306098 LOC100259318 LOC18100431 LOC11438657 LOC11426241 LOC11407830 LOC104646151 LOC101249921 LOC102590791 LOC102597013 LOC107773718 LOC107810407 LOC142169428 LOC4327549 LOC9270850 LOC100273250 LOC100193880 LOC123062344 LOC123079481 LOC123189587 LOC123427064 LOC123427065 LOC123444642 LOC110436107 LOC110433983 LOC100844964 LOC100831395 CHLRE_09g403219v5
Function* DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A Eukaryotic rpb5 RNA polymerase subunit family protein DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A uncharacterized LOC100499667 uncharacterized LOC100306098 DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A uncharacterized LOC100273250 DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A-like DNA-directed RNA polymerases II and IV subunit 5A DNA-directed RNA polymerases II and IV subunit 5A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03010 Ribosome 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03020 RNA polymerase 2
bra03420 Nucleotide excision repair 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
bra00073 Cutin, suberine and wax biosynthesis 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 6
bna03420 Nucleotide excision repair 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 7
bna03420 Nucleotide excision repair 7
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 3
gma03010 Ribosome 2
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 6
vvi03040 Spliceosome 2
vvi03010 Ribosome 2
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 6
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
mtr03010 Ribosome 2
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
mtr04141 Protein processing in endoplasmic reticulum 2
mtr00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03040 Spliceosome 3
sly03020 RNA polymerase 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 5
sot03040 Spliceosome 4
sot03013 Nucleocytoplasmic transport 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03015 mRNA surveillance pathway 4
sot03013 Nucleocytoplasmic transport 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
nta03420 Nucleotide excision repair 5
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
nta03420 Nucleotide excision repair 5
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 5
nta03420 Nucleotide excision repair 5
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03015 mRNA surveillance pathway 3
zma03040 Spliceosome 3
zma03050 Proteasome 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae04075 Plant hormone signal transduction 3
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 6
tae04075 Plant hormone signal transduction 6
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 4
cre03008 Ribosome biogenesis in eukaryotes 3
cre03018 RNA degradation 3
cre03420 Nucleotide excision repair 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107949695 107932797 107932939 821801 103859952 103869090 106418028 106439634 125600349 102629940 100499667 100306098 100259318 18100431 11438657 11426241 11407830 104646151 101249921 102590791 102597013 107773718 107810407 142169428 4327549 9270850 100273250 100193880 123062344 123079481 123189587 123427064 123427065 123444642 110436107 110433983 100844964 100831395 5723197
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