ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107941902	probable indole-3-acetic acid-amido synthetase GH3.1
ghi-r.1	107922696	probable indole-3-acetic acid-amido synthetase GH3.1
ghi-r.1	107900296	probable indole-3-acetic acid-amido synthetase GH3.1
ghi-r.1	107920803	probable indole-3-acetic acid-amido synthetase GH3.1
ath-u.5	GH3.1	Auxin-responsive GH3 family protein
ath-u.5	GH3.3	Auxin-responsive GH3 family protein
ath-u.5	BRU6	Auxin-responsive GH3 family protein
bra-r.6	103847985	probable indole-3-acetic acid-amido synthetase GH3.1
bra-r.6	103848751	indole-3-acetic acid-amido synthetase GH3.2
bra-r.6	103842426	indole-3-acetic acid-amido synthetase GH3.3
bna-r.1	106409452	probable indole-3-acetic acid-amido synthetase GH3.1
bna-r.1	106353688	indole-3-acetic acid-amido synthetase GH3.2
bna-r.1	106432954	probable indole-3-acetic acid-amido synthetase GH3.1
cit-r.1	102620300	probable indole-3-acetic acid-amido synthetase GH3.1
cit-r.1	102619738	probable indole-3-acetic acid-amido synthetase GH3.1
cit-r.1	102622009	probable indole-3-acetic acid-amido synthetase GH3.1
gma-u.5	100776488	probable indole-3-acetic acid-amido synthetase GH3.1
gma-u.5	100779307	indole-3-acetic acid-amido synthetase GH3.3
gma-u.5	100803737	probable indole-3-acetic acid-amido synthetase GH3.1
vvi-u.5	100250868	probable indole-3-acetic acid-amido synthetase GH3.1
vvi-u.5	100250741	probable indole-3-acetic acid-amido synthetase GH3.1
ppo-u.5	7465052	probable indole-3-acetic acid-amido synthetase GH3.1
ppo-u.5	7469610	probable indole-3-acetic acid-amido synthetase GH3.1
ppo-u.5	18101160	probable indole-3-acetic acid-amido synthetase GH3.1
mtr-u.5	11405444	probable indole-3-acetic acid-amido synthetase GH3.1
mtr-u.5	25479861	probable indole-3-acetic acid-amido synthetase GH3.1
sly-u.5	GH3.2	indole-3-acetic acid-amido synthetase GH3.2
sly-u.5	GH3-3	protein GRETCHEN HAGEN 3-3
sly-u.5	GH3-4	putative indole-3-acetic acid amido synthetase
sot-r.1	107058985	indole-3-acetic acid-amido synthetase GH3.3-like
sot-r.1	102595982	probable indole-3-acetic acid-amido synthetase GH3.1
sot-r.1	102600299	probable indole-3-acetic acid-amido synthetase GH3.1
nta-r.1	107780689	putative indole-3-acetic acid-amido synthetase GH3.1
nta-r.1	107789037	putative indole-3-acetic acid-amido synthetase GH3.1
nta-r.1	107794279	putative indole-3-acetic acid-amido synthetase GH3.1
osa-u.5	4326893	probable indole-3-acetic acid-amido synthetase GH3.2
zma-u.5	107275219	uncharacterized LOC107275219
zma-u.5	100280445	indole-3-acetic acid amido synthetase
zma-u.5	100383126	putative indole-3-acetic acid-amido synthetase GH3.1
tae-r.2	123062159	probable indole-3-acetic acid-amido synthetase GH3.2
tae-r.2	123188079	indole-3-acetic acid-amido synthetase GH3.8
tae-r.2	123052217	indole-3-acetic acid-amido synthetase GH3.8
hvu-r.1	123444492	probable indole-3-acetic acid-amido synthetase GH3.2
hvu-r.1	123425474	indole-3-acetic acid-amido synthetase GH3.8
sbi-r.1	8072113	probable indole-3-acetic acid-amido synthetase GH3.2
sbi-r.1	8063226	probable indole-3-acetic acid-amido synthetase GH3.8
sbi-r.1	8059110	probable indole-3-acetic acid-amido synthetase GH3.8
bdi-r.1	100833271	probable indole-3-acetic acid-amido synthetase GH3.2
bdi-r.1	100826517	probable indole-3-acetic acid-amido synthetase GH3.8

Top 50 coexpressed genes to 107941902 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107941902 (ghi-r.1 coexpression data)

CoexMap"107941902"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi04075 [list] [network] Plant hormone signal transduction (1215 genes)

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(13864 genes)

IEA

GO MF

GO:0016881 [list] [network] acid-amino acid ligase activity

(96 genes)

IEA

Protein

XP_016731019.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, cyto 3

(predict for XP_016731019.1)

Subcellular
localization
TargetP

other 8

(predict for XP_016731019.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107941902	ghi-r.1 for 107922696	ghi-r.1 for 107900296	ghi-r.1 for 107920803	ath-u.5 for GH3.1	ath-u.5 for GH3.3	ath-u.5 for BRU6	bra-r.6 for 103847985	bra-r.6 for 103848751	bra-r.6 for 103842426	bna-r.1 for 106409452	bna-r.1 for 106353688	bna-r.1 for 106432954	cit-r.1 for 102620300	cit-r.1 for 102619738	cit-r.1 for 102622009	gma-u.5 for 100776488	gma-u.5 for 100779307	gma-u.5 for 100803737	vvi-u.5 for 100250868	vvi-u.5 for 100250741	ppo-u.5 for 7465052	ppo-u.5 for 7469610	ppo-u.5 for 18101160	mtr-u.5 for 11405444	mtr-u.5 for 25479861	sly-u.5 for GH3.2	sly-u.5 for GH3-3	sly-u.5 for GH3-4	sot-r.1 for 107058985	sot-r.1 for 102595982	sot-r.1 for 102600299	nta-r.1 for 107780689	nta-r.1 for 107789037	nta-r.1 for 107794279	osa-u.5 for 4326893	zma-u.5 for 107275219	zma-u.5 for 100280445	zma-u.5 for 100383126	tae-r.2 for 123062159	tae-r.2 for 123188079	tae-r.2 for 123052217	hvu-r.1 for 123444492	hvu-r.1 for 123425474	sbi-r.1 for 8072113	sbi-r.1 for 8063226	sbi-r.1 for 8059110	bdi-r.1 for 100833271	bdi-r.1 for 100826517

Ortholog

Ortholog ID: 1785

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LOC107941902

LOC107922696

LOC107908866

GH3.1

BRU6

GH3

GH3.2

GH3-3

GH3-4

Function^*