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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107945036   protein SMG7 
 ghi-r.1   107906708   protein SMG7 
 ghi-r.1   107939458   protein SMG7 
 ghi-r.1   107953168   protein SMG7 
 ath-u.5   SMG7   Telomerase activating protein Est1 
 bra-r.6   103845757   protein SMG7 
 bra-r.6   103851271   protein SMG7 
 bna-r.1   106367879   nonsense-mediated mRNA decay factor SMG7 
 bna-r.1   106371812   nonsense-mediated mRNA decay factor SMG7-like 
 bna-r.1   106380760   nonsense-mediated mRNA decay factor SMG7 
 cit-r.1   102607318   nonsense-mediated mRNA decay factor SMG7 
 gma-u.5   100787602   protein SMG7 
 gma-u.5   100804837   protein SMG7 
 gma-u.5   100779982   protein SMG7 
 vvi-u.5   100267161   nonsense-mediated mRNA decay factor SMG7 
 vvi-u.5   100264171   nonsense-mediated mRNA decay factor SMG7 
 ppo-u.5   7479669   nonsense-mediated mRNA decay factor SMG7 
 ppo-u.5   7480120   nonsense-mediated mRNA decay factor SMG7 
 mtr-u.5   11431860   protein SMG7 
 mtr-u.5   25480553   protein SMG7 
 sly-u.5   101247106   nonsense-mediated mRNA decay factor SMG7-like 
 sly-u.5   101244332   nonsense-mediated mRNA decay factor SMG7-like 
 sot-r.1   102596652   protein SMG7 
 sot-r.1   102604630   protein SMG7-like 
 nta-r.1   107760707   nonsense-mediated mRNA decay factor SMG7 
 nta-r.1   107814392   nonsense-mediated mRNA decay factor SMG7 
 nta-r.1   107766276   nonsense-mediated mRNA decay factor SMG7 
 osa-u.5   4345227   nonsense-mediated mRNA decay factor SMG7 
 zma-u.5   100278146   Protein SMG7 
 zma-u.5   100384817   uncharacterized LOC100384817 
 tae-r.2   123103310   protein SMG7 
 tae-r.2   123111500   protein SMG7 
 tae-r.2   123120719   protein SMG7 
 hvu-r.1   123398020   protein SMG7 
 sbi-r.1   110432804   protein SMG7 
 bdi-r.1   100826571   protein SMG7 
 cre-r.1   CHLRE_16g648750v5   uncharacterized protein 

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Top 50 coexpressed genes to 107945036 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107945036 (ghi-r.1 coexpression data)

CoexMap"107945036"


ghiLOC107945036 | Entrez gene ID : 107945036    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 1 3 2 2 2 2 2 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03015 [list] [network] mRNA surveillance pathway (365 genes)
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (40 genes)  IEA  
GO CC
GO:0005697 [list] [network] telomerase holoenzyme complex  (12 genes)  IEA  
GO MF
GO:0070034 [list] [network] telomerase RNA binding  (16 genes)  IEA  
GO:0042162 [list] [network] telomeric DNA binding  (44 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016734348.2 [sequence] [blastp]
XP_016734357.2 [sequence] [blastp]
XP_016734362.1 [sequence] [blastp]
XP_040965520.1 [sequence] [blastp]
XP_040965521.1 [sequence] [blastp]
XP_040965522.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 2  (predict for XP_016734348.2)
nucl 7,  chlo 2  (predict for XP_016734357.2)
nucl 9,  cyto 1  (predict for XP_016734362.1)
nucl 9,  cyto 1  (predict for XP_040965520.1)
nucl 7,  chlo 2  (predict for XP_040965521.1)
nucl 7,  chlo 2  (predict for XP_040965522.1)
Subcellular
localization
TargetP
mito 4,  other 4  (predict for XP_016734348.2)
mito 4,  other 4  (predict for XP_016734357.2)
other 6,  mito 3  (predict for XP_016734362.1)
other 6,  mito 3  (predict for XP_040965520.1)
mito 4,  other 4  (predict for XP_040965521.1)
mito 4,  other 4  (predict for XP_040965522.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107945036
ghi-r.1
for
107906708
ghi-r.1
for
107939458
ghi-r.1
for
107953168
ath-u.5
for
SMG7
bra-r.6
for
103845757
bra-r.6
for
103851271
bna-r.1
for
106367879
bna-r.1
for
106371812
bna-r.1
for
106380760
cit-r.1
for
102607318
gma-u.5
for
100787602
gma-u.5
for
100804837
gma-u.5
for
100779982
vvi-u.5
for
100267161
vvi-u.5
for
100264171
ppo-u.5
for
7479669
ppo-u.5
for
7480120
mtr-u.5
for
11431860
mtr-u.5
for
25480553
sly-u.5
for
101247106
sly-u.5
for
101244332
sot-r.1
for
102596652
sot-r.1
for
102604630
nta-r.1
for
107760707
nta-r.1
for
107814392
nta-r.1
for
107766276
osa-u.5
for
4345227
zma-u.5
for
100278146
zma-u.5
for
100384817
tae-r.2
for
123103310
tae-r.2
for
123111500
tae-r.2
for
123120719
hvu-r.1
for
123398020
sbi-r.1
for
110432804
bdi-r.1
for
100826571
cre-r.1
for
CHLRE_16g648750v5


Ortholog ID: 4441
Species ghi ghi ghi ath bra bra bna bna bna cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC107945036 LOC107939458 LOC107953168 SMG7 LOC103845757 LOC103851271 LOC106367879 LOC106380760 LOC106425770 LOC102607318 LOC100787602 LOC100804837 LOC100779982 LOC100267161 LOC100264171 LOC7479669 LOC7480120 LOC11431860 LOC25480553 LOC101247106 LOC101244332 LOC102596652 LOC102604630 LOC107760707 LOC107766276 LOC107760624 LOC4345227 LOC100278146 LOC100384817 LOC123103310 LOC123111500 LOC123120719 LOC123398020 LOC110432804 LOC100826571 CHLRE_16g648750v5
Function* protein SMG7 protein SMG7 protein SMG7 Telomerase activating protein Est1 protein SMG7 protein SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 protein SMG7 protein SMG7 protein SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 protein SMG7 protein SMG7 nonsense-mediated mRNA decay factor SMG7-like nonsense-mediated mRNA decay factor SMG7-like protein SMG7 protein SMG7-like nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 nonsense-mediated mRNA decay factor SMG7 Protein SMG7 uncharacterized LOC100384817 protein SMG7 protein SMG7 protein SMG7 protein SMG7 protein SMG7 protein SMG7 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi03018 RNA degradation 3
ghi04144 Endocytosis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi03018 RNA degradation 3
ghi04144 Endocytosis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 8
ghi03018 RNA degradation 2
ghi04144 Endocytosis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra00562 Inositol phosphate metabolism 2
bra04070 Phosphatidylinositol signaling system 2
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 6
gma04382 Cornified envelope formation 2
gma00330 Arginine and proline metabolism 2
gma00410 beta-Alanine metabolism 2
gma00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 5
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi00270 Cysteine and methionine metabolism 2
vvi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo00561 Glycerolipid metabolism 2
ppo04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo03018 RNA degradation 2
ppo03082 ATP-dependent chromatin remodeling 2
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr03018 RNA degradation 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03460 Fanconi anemia pathway 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03460 Fanconi anemia pathway 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107945036 107939458 107953168 832060 103845757 103851271 106367879 106380760 106425770 102607318 100787602 100804837 100779982 100267161 100264171 7479669 7480120 11431860 25480553 101247106 101244332 102596652 102604630 107760707 107766276 107760624 4345227 100278146 100384817 123103310 123111500 123120719 123398020 110432804 100826571 5723741
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