ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	107945861	replication stress response regulator SDE2
ghi-r.1	107900946	replication stress response regulator SDE2
ghi-r.1	107948177	replication stress response regulator SDE2-like
ghi-r.1	107938161	replication stress response regulator SDE2
ath-u.5	AT3G06455	ubiquitin family protein
ath-u.5	AT4G01000	Ubiquitin-like superfamily protein
bra-r.6	103836862	replication stress response regulator SDE2
bra-r.6	103858825	replication stress response regulator SDE2
bna-r.1	106365733	replication stress response regulator SDE2-like
bna-r.1	125577650	replication stress response regulator SDE2-like
bna-r.1	106438633	replication stress response regulator SDE2-like
cit-r.1	127901093	uncharacterized LOC127901093
cit-r.1	102619656	uncharacterized LOC102619656
gma-u.5	100799364	replication stress response regulator SDE2
gma-u.5	100781694	replication stress response regulator SDE2
vvi-u.5	100255081	uncharacterized LOC100255081
ppo-u.5	7497246	uncharacterized LOC7497246
ppo-u.5	7494149	uncharacterized LOC7494149
mtr-u.5	11431773	replication stress response regulator SDE2
sly-u.5	101247169	uncharacterized LOC101247169
sot-r.1	102578820	protein SDE2 homolog
nta-r.1	107792884	uncharacterized LOC107792884
nta-r.1	107813826	uncharacterized LOC107813826
osa-u.5	4324395	uncharacterized LOC4324395
zma-u.5	100191811	Ubiquitin-like superfamily protein
zma-u.5	100194279	Ubiquitin-like superfamily protein
tae-r.2	123070561	replication stress response regulator SDE2
tae-r.2	123078968	replication stress response regulator SDE2
tae-r.2	123061866	replication stress response regulator SDE2
hvu-r.1	123444120	replication stress response regulator SDE2
sbi-r.1	110433829	protein SDE2 homolog
bdi-r.1	100840006	replication stress response regulator SDE2

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(7681 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(10797 genes)

IEA

Protein

XP_016735499.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, plas 1, cysk 1, cysk_plas 1

(predict for XP_016735499.1)

Subcellular
localization
TargetP

other 8, chlo 3

(predict for XP_016735499.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107945861	ghi-r.1 for 107900946	ghi-r.1 for 107948177	ghi-r.1 for 107938161	ath-u.5 for AT3G06455	ath-u.5 for AT4G01000	bra-r.6 for 103836862	bra-r.6 for 103858825	bna-r.1 for 106365733	bna-r.1 for 125577650	bna-r.1 for 106438633	cit-r.1 for 127901093	cit-r.1 for 102619656	gma-u.5 for 100799364	gma-u.5 for 100781694	vvi-u.5 for 100255081	ppo-u.5 for 7497246	ppo-u.5 for 7494149	mtr-u.5 for 11431773	sly-u.5 for 101247169	sot-r.1 for 102578820	nta-r.1 for 107792884	nta-r.1 for 107813826	osa-u.5 for 4324395	zma-u.5 for 100191811	zma-u.5 for 100194279	tae-r.2 for 123070561	tae-r.2 for 123078968	tae-r.2 for 123061866	hvu-r.1 for 123444120	sbi-r.1 for 110433829	bdi-r.1 for 100840006

Ortholog

Ortholog ID: 6539

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

replication stress response regulator SDE2

ubiquitin family protein

Ubiquitin-like superfamily protein

replication stress response regulator SDE2

replication stress response regulator SDE2-like

uncharacterized LOC127901093

uncharacterized LOC102619656

replication stress response regulator SDE2

uncharacterized LOC100255081

uncharacterized LOC7497246

uncharacterized LOC7494149

replication stress response regulator SDE2

uncharacterized LOC101247169

protein SDE2 homolog

uncharacterized LOC107792884

uncharacterized LOC107813826

uncharacterized LOC4324395

Ubiquitin-like superfamily protein

replication stress response regulator SDE2

protein SDE2 homolog

replication stress response regulator SDE2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5
ghi03015	mRNA surveillance pathway	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3
bra04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03015	mRNA surveillance pathway	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma03250	Viral life cycle - HIV-1	2
gma03083	Polycomb repressive complex	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	6
zma04120	Ubiquitin mediated proteolysis	4
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03015	mRNA surveillance pathway	3
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4
tae03015	mRNA surveillance pathway	3
tae00562	Inositol phosphate metabolism	3
tae04070	Phosphatidylinositol signaling system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3

Expression

Expression pattern

Entrez Gene ID^*

107945861

107900946

107938161

819822

826414

103836862

103858825

106365733

125577650

106388762

127901093

102619656

100799364

100781694

100255081

7497246

7494149

11431773

101247169

102578820

107792884

107813826

4324395

100191811

100194279

123070561

123078968

123061866

123444120

110433829

100840006

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 107945861 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107945861 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	2	2	1	2	1	1	1	2	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107945861 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107945861 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**