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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G06455   ubiquitin family protein 
 ath-r.7   AT3G06455   ubiquitin family protein 
 ath-e.2   AT3G06455   ubiquitin family protein 
 ath-u.5   AT4G01000   Ubiquitin-like superfamily protein 
 gma-u.5   100799364   replication stress response regulator SDE2 
 gma-u.5   100781694   replication stress response regulator SDE2 
 vvi-u.5   100255081   uncharacterized LOC100255081 
 ppo-u.5   7494149   uncharacterized LOC7494149 
 ppo-u.5   7497246   uncharacterized LOC7497246 
 mtr-u.5   11431773   replication stress response regulator SDE2 
 sly-u.5   101247169   uncharacterized LOC101247169 
 osa-u.5   4324395   uncharacterized LOC4324395 
 zma-u.5   100191811   Ubiquitin-like superfamily protein 
 zma-u.5   100194279   Ubiquitin-like superfamily protein 

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Top 50 coexpressed genes to AT3G06455 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G06455 (ath-u.5 coexpression data)

CoexMap"819822"


athAT3G06455 | Entrez gene ID : 819822      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 4 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_850523.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  chlo 1,  cyto_plas 1  (predict for NP_850523.2)
Subcellular
localization
TargetP
other 3  (predict for NP_850523.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G06455
ath-r.7
for
AT3G06455
ath-e.2
for
AT3G06455
ath-u.5
for
AT4G01000
gma-u.5
for
100799364
gma-u.5
for
100781694
vvi-u.5
for
100255081
ppo-u.5
for
7494149
ppo-u.5
for
7497246
mtr-u.5
for
11431773
sly-u.5
for
101247169
osa-u.5
for
4324395
zma-u.5
for
100191811
zma-u.5
for
100194279


Ortholog ID: 6539
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae hvu sbi bdi
Symbol AT4G01000 AT3G06455 LOC103858825 LOC103836862 LOC106388762 LOC106365733 LOC107900946 LOC107938161 LOC102619656 LOC127901093 LOC100781694 LOC100799364 LOC100255081 LOC7494149 LOC7497246 LOC11431773 LOC101247169 LOC102578820 LOC107813826 LOC107792884 LOC4324395 LOC100191811 LOC100194279 LOC123078968 LOC123070561 LOC123444120 LOC110433829 LOC100840006
Function* Ubiquitin-like superfamily protein ubiquitin family protein replication stress response regulator SDE2 replication stress response regulator SDE2 replication stress response regulator SDE2-like replication stress response regulator SDE2-like replication stress response regulator SDE2 replication stress response regulator SDE2 uncharacterized LOC102619656 uncharacterized LOC127901093 replication stress response regulator SDE2 replication stress response regulator SDE2 uncharacterized LOC100255081 uncharacterized LOC7494149 uncharacterized LOC7497246 replication stress response regulator SDE2 uncharacterized LOC101247169 protein SDE2 homolog uncharacterized LOC107813826 uncharacterized LOC107792884 uncharacterized LOC4324395 Ubiquitin-like superfamily protein Ubiquitin-like superfamily protein replication stress response regulator SDE2 replication stress response regulator SDE2 replication stress response regulator SDE2 protein SDE2 homolog replication stress response regulator SDE2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
gma03083 Polycomb repressive complex 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03015 mRNA surveillance pathway 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 6
zma04120 Ubiquitin mediated proteolysis 4
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03015 mRNA surveillance pathway 3
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826414 819822 103858825 103836862 106388762 106365733 107900946 107938161 102619656 127901093 100781694 100799364 100255081 7494149 7497246 11431773 101247169 102578820 107813826 107792884 4324395 100191811 100194279 123078968 123070561 123444120 110433829 100840006
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