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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107945985   probable polygalacturonase 
 ath-u.5   AT3G62110   Pectin lyase-like superfamily protein 
 gma-u.5   100778981   probable polygalacturonase 
 gma-u.5   100782602   probable polygalacturonase 
 gma-u.5   100786985   probable polygalacturonase 
 vvi-u.5   100260519   probable polygalacturonase 
 ppo-u.5   7481446   probable polygalacturonase 
 ppo-u.5   7455388   probable polygalacturonase 
 mtr-u.5   11435313   probable polygalacturonase 
 mtr-u.5   11408219   probable polygalacturonase 
 osa-u.5   4342825   probable polygalacturonase 
 osa-u.5   4334689   probable polygalacturonase 
 zma-u.5   100501436   uncharacterized LOC100501436 
 zma-u.5   100285112   polygalacturonase 

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Top 50 coexpressed genes to 107945985 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107945985 (ghi-r.1 coexpression data)

CoexMap"107945985"


ghiLOC107945985 | Entrez gene ID : 107945985    
Species ghi ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi sly sot nta cre tae
Paralog 1 1 3 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (1780 genes)  IEA  
GO CC
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (164 genes)  IEA  
Protein XP_016735649.1 [sequence] [blastp]
XP_040962728.1 [sequence] [blastp]
XP_040962729.1 [sequence] [blastp]
XP_040962730.1 [sequence] [blastp]
XP_040962731.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 4,  vacu 2,  chlo 1,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1  (predict for XP_016735649.1)
extr 4,  chlo 2,  nucl 1,  vacu 1,  cyto 1,  E.R. 1,  cysk_nucl 1,  nucl_plas 1,  cyto_E.R. 1  (predict for XP_040962728.1)
extr 4,  chlo 1,  nucl 1,  vacu 1,  cyto 1,  plas 1,  chlo_mito 1,  cysk_nucl 1,  E.R._vacu 1,  cyto_plas 1  (predict for XP_040962729.1)
extr 4,  chlo 2,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for XP_040962730.1)
cyto 4,  nucl 3,  cysk 3,  cysk_nucl 3  (predict for XP_040962731.1)
Subcellular
localization
TargetP
scret 9  (predict for XP_016735649.1)
scret 9  (predict for XP_040962728.1)
scret 9  (predict for XP_040962729.1)
scret 9  (predict for XP_040962730.1)
other 9  (predict for XP_040962731.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107945985
ath-u.5
for
AT3G62110
gma-u.5
for
100778981
gma-u.5
for
100782602
gma-u.5
for
100786985
vvi-u.5
for
100260519
ppo-u.5
for
7481446
ppo-u.5
for
7455388
mtr-u.5
for
11435313
mtr-u.5
for
11408219
osa-u.5
for
4342825
osa-u.5
for
4334689
zma-u.5
for
100501436
zma-u.5
for
100285112


Ortholog ID: 6594
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr mtr osa osa zma zma tae tae hvu sbi sbi bdi bdi
Symbol LOC107945985 LOC107897159 AT3G62110 LOC103830340 LOC103842039 LOC106452004 LOC111211377 LOC102630512 LOC100782602 LOC100786985 LOC100260519 LOC7481446 LOC7455388 LOC11435313 LOC11408219 LOC4342825 LOC4334689 LOC100285112 LOC100501436 LOC123114145 LOC123087780 LOC123394917 LOC8079686 LOC8054405 LOC100843088 LOC100825798
Function* probable polygalacturonase probable polygalacturonase Pectin lyase-like superfamily protein probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase polygalacturonase uncharacterized LOC100501436 probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase probable polygalacturonase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 4
bra04517 IgSF CAM signaling 4
bra04814 Motor proteins 4
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae04145 Phagosome 4
tae04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03450 Non-homologous end-joining 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 4
hvu04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107945985 107897159 825384 103830340 103842039 106452004 111211377 102630512 100782602 100786985 100260519 7481446 7455388 11435313 11408219 4342825 4334689 100285112 100501436 123114145 123087780 123394917 8079686 8054405 100843088 100825798
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