ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107946852	probable UMP-CMP kinase 2
ath-u.5	AT3G60180	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT4G25280	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	PYR6	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	100500111	UMP-CMP kinase family protein
gma-u.5	100777369	UMP-CMP kinase
gma-u.5	100806842	UMP-CMP kinase
vvi-u.5	100241478	UMP-CMP kinase 3
vvi-u.5	100248550	adenylate kinase-like
ppo-u.5	7486802	UMP-CMP kinase 3
ppo-u.5	18105025	UMP-CMP kinase 3
mtr-u.5	11405787	UMP-CMP kinase
mtr-u.5	11425503	UMP-CMP kinase 3
mtr-u.5	25491834	UMP-CMP kinase
sly-u.5	101243930	UMP-CMP kinase 3
sly-u.5	101249532	UMP-CMP kinase
sly-u.5	101259471	UMP-CMP kinase 3
osa-u.5	4343960	UMP-CMP kinase 3-like
osa-u.5	4339882	UMP-CMP kinase 1-like
osa-u.5	4334909	UMP-CMP kinase 2-like
zma-u.5	100283047	uncharacterized LOC100283047
zma-u.5	100282335	uncharacterized LOC100282335
zma-u.5	100193828	uncharacterized LOC100193828

Top 50 coexpressed genes to 107946852 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107946852 (ghi-r.1 coexpression data)

CoexMap"107946852"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00240 [list] [network] Pyrimidine metabolism (157 genes)

ghi01232 [list] [network] Nucleotide metabolism (202 genes)

ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)

GO BP

GO:0046705 [list] [network] CDP biosynthetic process	(6 genes)	IEA
GO:0006225 [list] [network] UDP biosynthetic process	(11 genes)	IEA
GO:0006207 [list] [network] 'de novo' pyrimidine nucleobase biosynthetic process	(20 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus	(7681 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(13864 genes)	IEA

GO MF

GO:0033862 [list] [network] UMP kinase activity	(11 genes)	IEA
GO:0005524 [list] [network] ATP binding	(5155 genes)	IEA

Protein

XP_016736826.1 [sequence] [blastp]
XP_016736827.1 [sequence] [blastp]
XP_016736828.1 [sequence] [blastp]
XP_016736829.1 [sequence] [blastp]
XP_016736830.1 [sequence] [blastp]
XP_040963195.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, chlo_mito 5, chlo 4	(predict for XP_016736826.1)
mito 5, chlo_mito 5, chlo 4	(predict for XP_016736827.1)
mito 5, chlo_mito 5, chlo 4	(predict for XP_016736828.1)
chlo 5, chlo_mito 5, mito 4	(predict for XP_016736829.1)
mito 6, chlo_mito 5, chlo 4	(predict for XP_016736830.1)
mito 5, chlo_mito 5, chlo 4	(predict for XP_040963195.1)

Subcellular
localization
TargetP

mito 4	(predict for XP_016736826.1)
mito 4	(predict for XP_016736827.1)
mito 4	(predict for XP_016736828.1)
mito 4	(predict for XP_016736829.1)
mito 4	(predict for XP_016736830.1)
mito 4	(predict for XP_040963195.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107946852	ath-u.5 for AT3G60180	ath-u.5 for AT4G25280	ath-u.5 for PYR6	gma-u.5 for 100500111	gma-u.5 for 100777369	gma-u.5 for 100806842	vvi-u.5 for 100241478	vvi-u.5 for 100248550	ppo-u.5 for 7486802	ppo-u.5 for 18105025	mtr-u.5 for 11405787	mtr-u.5 for 11425503	mtr-u.5 for 25491834	sly-u.5 for 101243930	sly-u.5 for 101249532	sly-u.5 for 101259471	osa-u.5 for 4343960	osa-u.5 for 4339882	osa-u.5 for 4334909	zma-u.5 for 100283047	zma-u.5 for 100282335	zma-u.5 for 100193828

Ortholog

Ortholog ID: 1113

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PYR6

Function^*

UMP-CMP kinase 3

probable UMP-CMP kinase 2

P-loop containing nucleoside triphosphate hydrolases superfamily protein

probable UMP-CMP kinase 2

probable UMP-CMP kinase 1

UMP-CMP kinase 3-like

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase family protein

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase 3-like

UMP-CMP kinase 3

UMP-CMP kinase 2-like

UMP-CMP kinase 4-like

uncharacterized LOC100193828

UMP/CMP kinase 1

UMP-CMP kinase 3

UMP-CMP kinase 4-like

UMP-CMP kinase 1

UMP-CMP kinase 4

UMP-CMP kinase 1

UMP-CMP kinase 2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	8
ghi01232	Nucleotide metabolism	8
ghi01240	Biosynthesis of cofactors	4
ghi00230	Purine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2
ghi00020	Citrate cycle (TCA cycle)	2
ghi00270	Cysteine and methionine metabolism	2
ghi00566	Sulfoquinovose metabolism	2
ghi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00071	Fatty acid degradation	4
ath01212	Fatty acid metabolism	4
ath00592	alpha-Linolenic acid metabolism	3
ath01200	Carbon metabolism	2
ath01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	4
ath04070	Phosphatidylinositol signaling system	4
ath04075	Plant hormone signal transduction	4
ath04626	Plant-pathogen interaction	4
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	7
bna01232	Nucleotide metabolism	7
bna01240	Biosynthesis of cofactors	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	2
cit03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	3
cit01250	Biosynthesis of nucleotide sugars	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01232	Nucleotide metabolism	4
gma04144	Endocytosis	3
gma00240	Pyrimidine metabolism	2
gma01240	Biosynthesis of cofactors	2
gma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	4
vvi04144	Endocytosis	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	4
ppo01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	2
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	7
sly01230	Biosynthesis of amino acids	5
sly01250	Biosynthesis of nucleotide sugars	4
sly00541	Biosynthesis of various nucleotide sugars	3
sly00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3
sot04142	Lysosome	3
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	3
sot00600	Sphingolipid metabolism	2
sot04142	Lysosome	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01232	Nucleotide metabolism	6
nta00230	Purine metabolism	4
nta04820	Cytoskeleton in muscle cells	2
nta00240	Pyrimidine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	6
tae01250	Biosynthesis of nucleotide sugars	6
tae01240	Biosynthesis of cofactors	6
tae00040	Pentose and glucuronate interconversions	3
tae00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu00240	Pyrimidine metabolism	2
hvu01232	Nucleotide metabolism	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu01200	Carbon metabolism	2
hvu04146	Peroxisome	2
hvu00240	Pyrimidine metabolism	2
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

107904290

107933483

825188

832710

103863071

103841868

125574913

102622017

102611020

100500111

100777369

100241478

7476752

7486802

25491834

11405787

101243930

101259471

102583881

102603990

107831858

107779924

4334909

9267059

100193828

100281735

123044142

123407220

123407223

8067908

8055365

100841564

100829558

5715973

The preparation time of this page was 0.5 [sec].


Species	ghi	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	sot	nta	cre	tae
Paralog	1	3	3	2	2	3	3	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107946852 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107946852 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**