ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	121216211	UMP-CMP kinase 3
ghi-r.1	107946852	probable UMP-CMP kinase 2
ghi-r.1	107933483	probable UMP-CMP kinase 2
ghi-r.1	107933299	UMP-CMP kinase 3
ath-u.5	AT3G60180	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT4G25280	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	PYR6	P-loop containing nucleoside triphosphate hydrolases superfamily protein
bra-r.6	103841868	probable UMP-CMP kinase 1
bra-r.6	103854712	UMP-CMP kinase 3
bra-r.6	103837127	UMP-CMP kinase 3
bna-r.1	106440355	UMP-CMP kinase 3
bna-r.1	106365882	UMP-CMP kinase 3
cit-r.1	102622017	UMP-CMP kinase
gma-u.5	100500111	UMP-CMP kinase family protein
gma-u.5	100777369	UMP-CMP kinase
gma-u.5	100806842	UMP-CMP kinase
vvi-u.5	100241478	UMP-CMP kinase 3
vvi-u.5	100248550	adenylate kinase-like
ppo-u.5	7486802	UMP-CMP kinase 3
ppo-u.5	18105025	UMP-CMP kinase 3
mtr-u.5	11405787	UMP-CMP kinase
mtr-u.5	11425503	UMP-CMP kinase 3
mtr-u.5	25491834	UMP-CMP kinase
sly-u.5	101243930	UMP-CMP kinase 3
sly-u.5	101249532	UMP-CMP kinase
sly-u.5	101259471	UMP-CMP kinase 3
sot-r.1	102583881	UMP-CMP kinase 3-like
sot-r.1	102603990	UMP-CMP kinase 3-like
nta-r.1	107779924	UMP-CMP kinase 3
nta-r.1	107812008	UMP-CMP kinase
nta-r.1	107815536	UMP-CMP kinase
osa-u.5	4343960	UMP-CMP kinase 3-like
osa-u.5	4339882	UMP-CMP kinase 1-like
osa-u.5	4334909	UMP-CMP kinase 2-like
zma-u.5	100283047	uncharacterized LOC100283047
zma-u.5	100282335	uncharacterized LOC100282335
zma-u.5	100193828	uncharacterized LOC100193828
tae-r.2	123052021	UMP-CMP kinase 3
tae-r.2	123151068	UMP-CMP kinase 4
tae-r.2	123043242	UMP-CMP kinase 2
hvu-r.1	123425228	UMP-CMP kinase 3
hvu-r.1	123424407	UMP-CMP kinase 2-like
hvu-r.1	123407223	UMP-CMP kinase 4-like
sbi-r.1	8056954	UMP-CMP kinase 2
sbi-r.1	8055365	UMP-CMP kinase 4
sbi-r.1	8082676	UMP-CMP kinase 3
bdi-r.1	100829558	UMP-CMP kinase 2
bdi-r.1	100836311	UMP-CMP kinase 3
bdi-r.1	100841564	UMP-CMP kinase 1
cre-r.1	CHLRE_10g438650v5	uncharacterized protein

Top 50 coexpressed genes to 121216211 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 121216211 (ghi-r.1 coexpression data)

CoexMap"121216211"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi00240 [list] [network] Pyrimidine metabolism (157 genes)

ghi01232 [list] [network] Nucleotide metabolism (202 genes)

ghi01240 [list] [network] Biosynthesis of cofactors (583 genes)

GO BP

GO:0046705 [list] [network] CDP biosynthetic process	(6 genes)	IEA
GO:0006225 [list] [network] UDP biosynthetic process	(11 genes)	IEA
GO:0006207 [list] [network] 'de novo' pyrimidine nucleobase biosynthetic process	(20 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus	(7681 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(13864 genes)	IEA

GO MF

GO:0033862 [list] [network] UMP kinase activity	(11 genes)	IEA
GO:0005524 [list] [network] ATP binding	(5155 genes)	IEA

Protein

XP_040947518.1 [sequence] [blastp]
XP_040947519.1 [sequence] [blastp]
XP_040947520.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, nucl 1, extr 1, golg 1	(predict for XP_040947518.1)
cyto 5, nucl 2, cyto_pero 2, cyto_E.R. 2	(predict for XP_040947519.1)
cyto 5, nucl 2, cyto_pero 2, cyto_E.R. 2	(predict for XP_040947520.1)

Subcellular
localization
TargetP

scret 7	(predict for XP_040947518.1)
other 8	(predict for XP_040947519.1)
other 8	(predict for XP_040947520.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121216211	ghi-r.1 for 107946852	ghi-r.1 for 107933483	ghi-r.1 for 107933299	ath-u.5 for AT3G60180	ath-u.5 for AT4G25280	ath-u.5 for PYR6	bra-r.6 for 103841868	bra-r.6 for 103854712	bra-r.6 for 103837127	bna-r.1 for 106440355	bna-r.1 for 106365882	cit-r.1 for 102622017	gma-u.5 for 100500111	gma-u.5 for 100777369	gma-u.5 for 100806842	vvi-u.5 for 100241478	vvi-u.5 for 100248550	ppo-u.5 for 7486802	ppo-u.5 for 18105025	mtr-u.5 for 11405787	mtr-u.5 for 11425503	mtr-u.5 for 25491834	sly-u.5 for 101243930	sly-u.5 for 101249532	sly-u.5 for 101259471	sot-r.1 for 102583881	sot-r.1 for 102603990	nta-r.1 for 107779924	nta-r.1 for 107812008	nta-r.1 for 107815536	osa-u.5 for 4343960	osa-u.5 for 4339882	osa-u.5 for 4334909	zma-u.5 for 100283047	zma-u.5 for 100282335	zma-u.5 for 100193828	tae-r.2 for 123052021	tae-r.2 for 123151068	tae-r.2 for 123043242	hvu-r.1 for 123425228	hvu-r.1 for 123424407	hvu-r.1 for 123407223	sbi-r.1 for 8056954	sbi-r.1 for 8055365	sbi-r.1 for 8082676	bdi-r.1 for 100829558	bdi-r.1 for 100836311	bdi-r.1 for 100841564	cre-r.1 for CHLRE_10g438650v5

Ortholog

Ortholog ID: 1113

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PYR6

Function^*

probable UMP-CMP kinase 2

UMP-CMP kinase 3

P-loop containing nucleoside triphosphate hydrolases superfamily protein

probable UMP-CMP kinase 1

UMP-CMP kinase 3

probable UMP-CMP kinase 2

UMP-CMP kinase 3

UMP-CMP kinase 3-like

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase family protein

UMP-CMP kinase

UMP/CMP kinase family protein

UMP-CMP kinase 3

adenylate kinase-like

UMP-CMP kinase 3

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase

UMP-CMP kinase 3

UMP-CMP kinase 3-like

UMP-CMP kinase 3

UMP-CMP kinase 3-like

UMP-CMP kinase 2-like

UMP-CMP kinase 4-like

uncharacterized LOC100283047

uncharacterized LOC100193828

UMP/CMP kinase 1

UMP-CMP kinase 3

UMP-CMP kinase 2-like

UMP-CMP kinase 4-like

UMP-CMP kinase 2

UMP-CMP kinase 4

UMP-CMP kinase 1

UMP-CMP kinase 2

UMP-CMP kinase 3

UMP-CMP kinase 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00020	Citrate cycle (TCA cycle)	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2
ghi00020	Citrate cycle (TCA cycle)	2
ghi00270	Cysteine and methionine metabolism	2
ghi00566	Sulfoquinovose metabolism	2
ghi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	8
ghi01232	Nucleotide metabolism	8
ghi01240	Biosynthesis of cofactors	4
ghi00230	Purine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00071	Fatty acid degradation	4
ath01212	Fatty acid metabolism	4
ath00592	alpha-Linolenic acid metabolism	3
ath01200	Carbon metabolism	2
ath01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	4
ath04070	Phosphatidylinositol signaling system	4
ath04075	Plant hormone signal transduction	4
ath04626	Plant-pathogen interaction	4
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	4
bra00240	Pyrimidine metabolism	4
bra01232	Nucleotide metabolism	4
bra00541	Biosynthesis of various nucleotide sugars	3
bra01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	7
bna01232	Nucleotide metabolism	7
bna01240	Biosynthesis of cofactors	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	7
bna01232	Nucleotide metabolism	7
bna01240	Biosynthesis of cofactors	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	2
cit03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	3
cit01250	Biosynthesis of nucleotide sugars	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01232	Nucleotide metabolism	4
gma04144	Endocytosis	3
gma00240	Pyrimidine metabolism	2
gma01240	Biosynthesis of cofactors	2
gma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma01240	Biosynthesis of cofactors	3
gma00520	Amino sugar and nucleotide sugar metabolism	2
gma01250	Biosynthesis of nucleotide sugars	2
gma00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	4
vvi04144	Endocytosis	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00280	Valine, leucine and isoleucine degradation	2
vvi00410	beta-Alanine metabolism	2
vvi00640	Propanoate metabolism	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	4
ppo01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	8
ppo01250	Biosynthesis of nucleotide sugars	8
ppo00541	Biosynthesis of various nucleotide sugars	7
ppo00520	Amino sugar and nucleotide sugar metabolism	5
ppo00040	Pentose and glucuronate interconversions	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	2
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00240	Pyrimidine metabolism	2
mtr01232	Nucleotide metabolism	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	7
sly01230	Biosynthesis of amino acids	5
sly01250	Biosynthesis of nucleotide sugars	4
sly00541	Biosynthesis of various nucleotide sugars	3
sly00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3
sot04142	Lysosome	3
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	3
sot00600	Sphingolipid metabolism	2
sot04142	Lysosome	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01232	Nucleotide metabolism	6
nta00230	Purine metabolism	4
nta04820	Cytoskeleton in muscle cells	2
nta00240	Pyrimidine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01232	Nucleotide metabolism	6
nta00230	Purine metabolism	4
nta04820	Cytoskeleton in muscle cells	2
nta00240	Pyrimidine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01250	Biosynthesis of nucleotide sugars	2
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa01240	Biosynthesis of cofactors	2
osa00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	3
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	6
tae01250	Biosynthesis of nucleotide sugars	6
tae01240	Biosynthesis of cofactors	6
tae00040	Pentose and glucuronate interconversions	3
tae00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu01200	Carbon metabolism	2
hvu04146	Peroxisome	2
hvu00240	Pyrimidine metabolism	2
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu00240	Pyrimidine metabolism	2
hvu01232	Nucleotide metabolism	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00240	Pyrimidine metabolism	2
bdi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	6
bdi01250	Biosynthesis of nucleotide sugars	6
bdi01240	Biosynthesis of cofactors	4
bdi00040	Pentose and glucuronate interconversions	3
bdi00053	Ascorbate and aldarate metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

107946852

107933483

107904290

825188

828631

832710

103841868

103854712

103863071

106348590

125574913

102622017

102611020

100500111

100777369

100306603

100241478

100248550

7486802

7476752

7483783

11405787

11425503

25491834

101243930

101249532

101259471

102583881

102603990

107779924

107831858

107800174

4343960

4334909

9267059

100283047

100193828

100281735

123044142

123424407

123407223

123407220

8056954

8055365

8067908

100829558

100836311

100841564

5715973

The preparation time of this page was 0.4 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	2	1	3	2	2	3	3	2	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 121216211 (ghi-r.1 coexpression data)

Top 50 enrichment test to 121216211 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**