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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107947082   ethylene-responsive transcription factor CRF1 
 ghi-r.1   107930196   ethylene-responsive transcription factor CRF4 
 ghi-r.1   107923177   ethylene-responsive transcription factor CRF5 
 ath-u.5   CRF4   cytokinin response factor 4 
 ath-u.5   CRF3   cytokinin response factor 3 
 ath-u.5   CRF2   cytokinin response factor 2 
 bra-r.6   103841987   ethylene-responsive transcription factor CRF6 
 bra-r.6   103830314   ethylene-responsive transcription factor CRF6 
 bra-r.6   103858592   ethylene-responsive transcription factor CRF1 
 bna-r.1   125590083   ethylene-responsive transcription factor CRF2-like 
 bna-r.1   111213134   ethylene-responsive transcription factor CRF3-like 
 cit-r.1   102622695   pathogenesis-related genes transcriptional activator PTI6-like 
 gma-u.5   100306115   uncharacterized LOC100306115 
 vvi-u.5   100255049   pathogenesis-related genes transcriptional activator PTI6 
 vvi-u.5   100248494   ethylene-responsive transcription factor CRF4-like 
 ppo-u.5   7485212   ethylene-responsive transcription factor CRF4 
 ppo-u.5   18105671   ethylene-responsive transcription factor CRF4 
 ppo-u.5   7472720   ethylene-responsive transcription factor CRF1 
 mtr-u.5   11436858   pathogenesis-related genes transcriptional activator PTI6 
 mtr-u.5   11438062   pathogenesis-related genes transcriptional activator PTI6 
 mtr-u.5   11438409   ethylene-responsive transcription factor CRF2 
 sly-u.5   CRF5   cytokinin response factor 5 
 sly-u.5   101264747   ethylene-responsive transcription factor CRF1 
 sly-u.5   PTI6   pathogenesis-related genes transcriptional activator PTI6 
 sot-r.1   102578223   pathogenesis-related genes transcriptional activator PTI6 
 sot-r.1   102591238   ethylene-responsive transcription factor CRF4 
 sot-r.1   102605010   ethylene-responsive transcription factor CRF4-like 
 nta-r.1   107767830   pathogenesis-related genes transcriptional activator PTI6 
 nta-r.1   107828273   ethylene-responsive transcription factor CRF4-like 
 nta-r.1   107820911   pathogenesis-related genes transcriptional activator PTI6-like 
 osa-u.5   4326729   ethylene-responsive transcription factor CRF1 
 zma-u.5   103634995   pathogenesis-related genes transcriptional activator PTI6 
 tae-r.2   123077825   ethylene-responsive transcription factor CRF1 
 tae-r.2   123060741   ethylene-responsive transcription factor CRF1 
 tae-r.2   123065201   ethylene-responsive transcription factor CRF1-like 
 hvu-r.1   123439662   ethylene-responsive transcription factor CRF1-like 
 sbi-r.1   8079479   ethylene-responsive transcription factor CRF2 
 bdi-r.1   100831723   pathogenesis-related genes transcriptional activator PTI6 

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Top 50 coexpressed genes to 107947082 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107947082 (ghi-r.1 coexpression data)

CoexMap"107947082"


ghiLOC107947082 | Entrez gene ID : 107947082    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 3 2 1 1 2 3 3 3 3 3 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3140 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
Protein XP_016737121.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_016737121.1)
Subcellular
localization
TargetP
other 7  (predict for XP_016737121.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107947082
ghi-r.1
for
107930196
ghi-r.1
for
107923177
ath-u.5
for
CRF4
ath-u.5
for
CRF3
ath-u.5
for
CRF2
bra-r.6
for
103841987
bra-r.6
for
103830314
bra-r.6
for
103858592
bna-r.1
for
125590083
bna-r.1
for
111213134
cit-r.1
for
102622695
gma-u.5
for
100306115
vvi-u.5
for
100255049
vvi-u.5
for
100248494
ppo-u.5
for
7485212
ppo-u.5
for
18105671
ppo-u.5
for
7472720
mtr-u.5
for
11436858
mtr-u.5
for
11438062
mtr-u.5
for
11438409
sly-u.5
for
CRF5
sly-u.5
for
101264747
sly-u.5
for
PTI6
sot-r.1
for
102578223
sot-r.1
for
102591238
sot-r.1
for
102605010
nta-r.1
for
107767830
nta-r.1
for
107828273
nta-r.1
for
107820911
osa-u.5
for
4326729
zma-u.5
for
103634995
tae-r.2
for
123077825
tae-r.2
for
123060741
tae-r.2
for
123065201
hvu-r.1
for
123439662
sbi-r.1
for
8079479
bdi-r.1
for
100831723


Ortholog ID: 518
Species ghi ghi ath ath ath bra bra bra bna bna cit gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107890696 LOC107952935 CRF3 CRF2 CRF5 LOC103830314 LOC103867742 LOC103852041 LOC106375986 LOC106438449 LOC102614115 LOC100776453 LOC100255049 LOC100246641 LOC7485212 LOC7494656 LOC7464740 LOC11436858 LOC11438409 LOC11418481 LOC101264747 PTI6 CRF4 LOC102578223 LOC102591238 LOC102599019 LOC107767830 LOC107828273 LOC107788580 LOC4326729 LOC103634995 LOC123077825 LOC123060741 LOC123065201 LOC123439662 LOC8079479 LOC100831723
Function* ethylene-responsive transcription factor CRF1 ethylene-responsive transcription factor CRF5 cytokinin response factor 3 cytokinin response factor 2 cytokinin response factor 5 ethylene-responsive transcription factor CRF6 ethylene-responsive transcription factor CRF4-like ethylene-responsive transcription factor CRF3 ethylene-responsive transcription factor CRF2 ethylene-responsive transcription factor CRF2 ethylene-responsive transcription factor CRF4 ethylene-responsive transcription factor CRF2 pathogenesis-related genes transcriptional activator PTI6 pathogenesis-related genes transcriptional activator PTI6 ethylene-responsive transcription factor CRF4 pathogenesis-related genes transcriptional activator PTI6 pathogenesis-related genes transcriptional activator PTI6 pathogenesis-related genes transcriptional activator PTI6 ethylene-responsive transcription factor CRF2 pathogenesis-related genes transcriptional activator PTI6 ethylene-responsive transcription factor CRF1 pathogenesis-related genes transcriptional activator PTI6 cytokinin response factor 4 pathogenesis-related genes transcriptional activator PTI6 ethylene-responsive transcription factor CRF4 ethylene-responsive transcription factor CRF2 pathogenesis-related genes transcriptional activator PTI6 ethylene-responsive transcription factor CRF4-like ethylene-responsive transcription factor CRF2-like ethylene-responsive transcription factor CRF1 pathogenesis-related genes transcriptional activator PTI6 ethylene-responsive transcription factor CRF1 ethylene-responsive transcription factor CRF1 ethylene-responsive transcription factor CRF1-like ethylene-responsive transcription factor CRF1-like ethylene-responsive transcription factor CRF2 pathogenesis-related genes transcriptional activator PTI6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 4
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00380 Tryptophan metabolism 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00380 Tryptophan metabolism 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 4
sot04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
sot00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 3
nta04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107890696 107952935 835410 828475 819239 103830314 103867742 103852041 106375986 106438449 102614115 100776453 100255049 100246641 7485212 7494656 7464740 11436858 11438409 11418481 101264747 544043 101254274 102578223 102591238 102599019 107767830 107828273 107788580 4326729 103634995 123077825 123060741 123065201 123439662 8079479 100831723
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