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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107949660   pentatricopeptide repeat-containing protein At5g62370 
 ghi-r.1   107886167   pentatricopeptide repeat-containing protein At5g62370 
 ath-u.5   AT5G62370   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103866712   pentatricopeptide repeat-containing protein At5g62370 
 bna-r.1   106375647   pentatricopeptide repeat-containing protein At5g62370 
 bna-r.1   106445490   pentatricopeptide repeat-containing protein At5g62370-like 
 cit-r.1   102625308   pentatricopeptide repeat-containing protein At5g62370 
 vvi-u.5   100248078   pentatricopeptide repeat-containing protein At5g62370 
 ppo-u.5   112328701   pentatricopeptide repeat-containing protein At5g62370-like 
 ppo-u.5   18098101   pentatricopeptide repeat-containing protein At5g62370 
 sly-u.5   101265213   pentatricopeptide repeat-containing protein At5g62370 
 sot-r.1   102601868   pentatricopeptide repeat-containing protein At5g62370 
 nta-r.1   107771002   uncharacterized LOC107771002 
 nta-r.1   107785963   uncharacterized LOC107785963 
 nta-r.1   107815729   uncharacterized LOC107815729 
 zma-u.5   100502191   uncharacterized LOC100502191 

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Top 50 coexpressed genes to 107949660 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107949660 (ghi-r.1 coexpression data)

CoexMap"107949660"


ghiLOC107949660 | Entrez gene ID : 107949660    
Species ghi ath bra bna cit vvi ppo sly sot nta zma bdi osa tae cre mtr sbi gma hvu
Paralog 2 1 1 2 1 1 2 1 1 3 1 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016739874.2 [sequence] [blastp]
XP_016739875.2 [sequence] [blastp]
XP_016739876.2 [sequence] [blastp]
XP_016739877.2 [sequence] [blastp]
XP_016739878.2 [sequence] [blastp]
XP_040946087.1 [sequence] [blastp]
XP_040946088.1 [sequence] [blastp]
XP_040946089.1 [sequence] [blastp]
XP_040946090.1 [sequence] [blastp]
XP_040946091.1 [sequence] [blastp]
XP_040946092.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  cyto_mito 3,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016739874.2)
mito 4,  cyto_mito 3,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016739875.2)
mito 4,  cyto_mito 3,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016739876.2)
mito 4,  cyto_mito 3,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016739877.2)
mito 4,  cyto_mito 3,  nucl 2,  chlo 1,  cyto 1  (predict for XP_016739878.2)
mito 4,  cyto_mito 3,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_040946087.1)
mito 4,  cyto_mito 3,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_040946088.1)
mito 4,  cyto_mito 3,  nucl 3,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_040946089.1)
mito 4,  cyto_mito 3,  nucl 2,  chlo 1,  cyto 1  (predict for XP_040946090.1)
mito 4,  cyto_mito 3,  nucl 2,  chlo 1,  cyto 1  (predict for XP_040946091.1)
chlo 5,  nucl 2,  extr 1,  nucl_plas 1  (predict for XP_040946092.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_016739874.2)
mito 6  (predict for XP_016739875.2)
mito 6  (predict for XP_016739876.2)
mito 6  (predict for XP_016739877.2)
mito 6  (predict for XP_016739878.2)
mito 6  (predict for XP_040946087.1)
mito 6  (predict for XP_040946088.1)
mito 6  (predict for XP_040946089.1)
mito 6  (predict for XP_040946090.1)
mito 6  (predict for XP_040946091.1)
scret 5  (predict for XP_040946092.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107949660
ghi-r.1
for
107886167
ath-u.5
for
AT5G62370
bra-r.6
for
103866712
bna-r.1
for
106375647
bna-r.1
for
106445490
cit-r.1
for
102625308
vvi-u.5
for
100248078
ppo-u.5
for
112328701
ppo-u.5
for
18098101
sly-u.5
for
101265213
sot-r.1
for
102601868
nta-r.1
for
107771002
nta-r.1
for
107785963
nta-r.1
for
107815729
zma-u.5
for
100502191


Ortholog ID: 12943
Species ghi ghi ath bra bna bna cit vvi ppo ppo sly sot nta nta nta zma
Symbol LOC107949660 LOC107886167 AT5G62370 LOC103866712 LOC106375647 LOC106445490 LOC102625308 LOC100248078 LOC112328701 LOC18098101 LOC101265213 LOC102601868 LOC107771002 LOC107785963 LOC107815729 LOC100502191
Function* pentatricopeptide repeat-containing protein At5g62370 pentatricopeptide repeat-containing protein At5g62370 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g62370 pentatricopeptide repeat-containing protein At5g62370 pentatricopeptide repeat-containing protein At5g62370-like pentatricopeptide repeat-containing protein At5g62370 pentatricopeptide repeat-containing protein At5g62370 pentatricopeptide repeat-containing protein At5g62370-like pentatricopeptide repeat-containing protein At5g62370 pentatricopeptide repeat-containing protein At5g62370 pentatricopeptide repeat-containing protein At5g62370 uncharacterized LOC107771002 uncharacterized LOC107785963 uncharacterized LOC107815729 uncharacterized LOC100502191
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo00230 Purine metabolism 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107949660 107886167 836358 103866712 106375647 106445490 102625308 100248078 112328701 18098101 101265213 102601868 107771002 107785963 107815729 100502191
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