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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107949697   histone deacetylase 6 
 ath-u.5   HDA6   histone deacetylase 6 
 gma-u.5   HDA3   histone deacetylase 
 gma-u.5   HDA7   histone deacetylase 
 gma-u.5   HDA16   histone deacetylase 
 vvi-u.5   100244903   histone deacetylase 6 
 ppo-u.5   7456903   histone deacetylase 6 
 ppo-u.5   7453794   histone deacetylase 6 
 mtr-u.5   11414050   histone deacetylase 6 
 sly-u.5   101256864   histone deacetylase 6-like 
 sly-u.5   HDA3   histone deacetylase 
 osa-u.5   4345332   histone deacetylase 6 
 zma-u.5   HDA108   histone deacetylase 108 

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Top 50 coexpressed genes to 107949697 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107949697 (ghi-r.1 coexpression data)

CoexMap"107949697"


ghiLOC107949697 | Entrez gene ID : 107949697    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 3 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03082 [list] [network] ATP-dependent chromatin remodeling (185 genes)
ghi03083 [list] [network] Polycomb repressive complex (148 genes)
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1121 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (19 genes)  IEA  
Protein XP_016739921.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  cyto_E.R. 2,  pero 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_016739921.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016739921.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107949697
ath-u.5
for
HDA6
gma-u.5
for
HDA3
gma-u.5
for
HDA7
gma-u.5
for
HDA16
vvi-u.5
for
100244903
ppo-u.5
for
7456903
ppo-u.5
for
7453794
mtr-u.5
for
11414050
sly-u.5
for
101256864
sly-u.5
for
HDA3
osa-u.5
for
4345332
zma-u.5
for
HDA108


Ortholog ID: 6361
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC107949697 LOC107886255 HDA6 LOC103837453 LOC103873731 LOC106422589 LOC106347870 LOC102617679 HDA16 HDA3 LOC100244903 LOC7453794 LOC7456903 LOC11414050 HDA3 LOC101256864 LOC102587267 LOC102605718 LOC107828384 LOC107830951 LOC4345332 HDA108 LOC123144362 LOC123136940 LOC123402944 LOC8073075 LOC100834631
Function* histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase histone deacetylase histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase histone deacetylase 6-like histone deacetylase 6-like histone deacetylase 6 histone deacetylase 6-like histone deacetylase 6 histone deacetylase 6 histone deacetylase 108 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6 histone deacetylase 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
bra04141 Protein processing in endoplasmic reticulum 4
bra01210 2-Oxocarboxylic acid metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 4
gma03018 RNA degradation 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma03082 ATP-dependent chromatin remodeling 3
gma03083 Polycomb repressive complex 3
gma04075 Plant hormone signal transduction 2
gma00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 5
mtr03083 Polycomb repressive complex 2
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 5
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 3
sbi03083 Polycomb repressive complex 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107949697 107886255 836431 103837453 103873731 106422589 106347870 102617679 100819221 100801159 100244903 7453794 7456903 11414050 101258377 101256864 102587267 102605718 107828384 107830951 4345332 541681 123144362 123136940 123402944 8073075 100834631
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