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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107949823   eukaryotic peptide chain release factor subunit 1-3 
 ghi-r.1   107954830   eukaryotic peptide chain release factor subunit 1-3 
 ghi-r.1   107952787   eukaryotic peptide chain release factor subunit 1-3 
 ghi-r.1   121203480   eukaryotic peptide chain release factor subunit 1-3 
 ath-u.5   ERF1-3   eukaryotic release factor 1-3 
 ath-u.5   ERF1-1   eukaryotic release factor 1-1 
 ath-u.5   ERF1-2   eukaryotic release factor 1-2 
 bra-r.6   103836133   eukaryotic peptide chain release factor subunit 1-2 
 bra-r.6   103846307   eukaryotic peptide chain release factor subunit 1-3 
 bra-r.6   103874912   eukaryotic peptide chain release factor subunit 1-1 
 bna-r.1   125575160   eukaryotic peptide chain release factor subunit 1-3 
 bna-r.1   106348956   eukaryotic peptide chain release factor subunit 1-1 
 bna-r.1   106382367   eukaryotic peptide chain release factor subunit 1-2 
 cit-r.1   102619042   eukaryotic peptide chain release factor subunit 1-3 
 cit-r.1   102617245   eukaryotic peptide chain release factor subunit 1-3 
 gma-u.5   100813343   eukaryotic peptide chain release factor subunit 1-3 
 gma-u.5   100786788   eukaryotic peptide chain release factor subunit 1-3 
 gma-u.5   100785916   eukaryotic peptide chain release factor subunit 1-3 
 vvi-u.5   100267567   eukaryotic peptide chain release factor subunit 1-3 
 vvi-u.5   100248954   eukaryotic peptide chain release factor subunit 1-3-like 
 vvi-u.5   100242471   eukaryotic peptide chain release factor subunit 1-3 
 ppo-u.5   7491448   eukaryotic peptide chain release factor subunit 1-3 
 ppo-u.5   7463221   eukaryotic peptide chain release factor subunit 1-3 
 ppo-u.5   7466289   eukaryotic peptide chain release factor subunit 1-3 
 mtr-u.5   11427620   eukaryotic peptide chain release factor subunit 1-3 
 mtr-u.5   11413561   eukaryotic peptide chain release factor subunit 1-3 
 mtr-u.5   25497360   eukaryotic peptide chain release factor subunit 1-3 
 sly-u.5   101261770   eukaryotic peptide chain release factor subunit 1-3 
 sly-u.5   101255309   eukaryotic peptide chain release factor subunit 1-3-like 
 sly-u.5   101251066   eukaryotic peptide chain release factor subunit 1-3 
 sot-r.1   102577912   eukaryotic peptide chain release factor subunit 1-3-like protein 
 sot-r.1   102596756   eukaryotic peptide chain release factor subunit 1-3-like 
 sot-r.1   102594296   eukaryotic peptide chain release factor subunit 1-3-like 
 nta-r.1   107795408   eukaryotic peptide chain release factor subunit 1-3 
 nta-r.1   107764677   eukaryotic peptide chain release factor subunit 1-3-like 
 nta-r.1   107770602   eukaryotic peptide chain release factor subunit 1-3 
 osa-u.5   4343757   eukaryotic peptide chain release factor subunit 1-3 
 osa-u.5   4338603   eukaryotic peptide chain release factor subunit 1-2 
 osa-u.5   4333840   eukaryotic peptide chain release factor subunit 1-3 
 zma-u.5   100281195   eukaryotic peptide chain release factor subunit 1-1 
 zma-u.5   100285172   eukaryotic peptide chain release factor subunit 1-1 
 tae-r.2   123087157   eukaryotic peptide chain release factor subunit 1-3 
 tae-r.2   123090806   eukaryotic peptide chain release factor subunit 1-3 
 tae-r.2   123080605   eukaryotic peptide chain release factor subunit 1-2 
 hvu-r.1   123412043   eukaryotic peptide chain release factor subunit 1-2-like 
 hvu-r.1   123445427   eukaryotic peptide chain release factor subunit 1-1-like 
 hvu-r.1   123447345   eukaryotic peptide chain release factor subunit 1-3-like 
 sbi-r.1   8055826   eukaryotic peptide chain release factor subunit 1-2 
 sbi-r.1   8058380   eukaryotic peptide chain release factor subunit 1-3 
 sbi-r.1   8062938   eukaryotic peptide chain release factor subunit 1-3 
 bdi-r.1   100821402   eukaryotic peptide chain release factor subunit 1-2 
 bdi-r.1   100844328   eukaryotic peptide chain release factor subunit 1-3 
 bdi-r.1   100824892   eukaryotic peptide chain release factor subunit 1-2 
 cre-r.1   CHLRE_13g587050v5   uncharacterized protein 

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Top 50 coexpressed genes to 107949823 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107949823 (ghi-r.1 coexpression data)

CoexMap"107949823"


ghiLOC107949823 | Entrez gene ID : 107949823    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 3 3 3 3 3 3 3 2 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03015 [list] [network] mRNA surveillance pathway (365 genes)
GO BP
GO:0002184 [list] [network] cytoplasmic translational termination  (5 genes)  IEA  
GO CC
GO:0018444 [list] [network] translation release factor complex  (11 genes)  IEA  
GO:0005829 [list] [network] cytosol  (2580 genes)  IEA  
GO MF
GO:1990825 [list] [network] sequence-specific mRNA binding  (5 genes)  IEA  
GO:0016149 [list] [network] translation release factor activity, codon specific  (13 genes)  IEA  
Protein XP_016740081.1 [sequence] [blastp]
XP_016740082.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_016740081.1)
cyto 6,  nucl 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_016740082.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016740081.1)
other 8  (predict for XP_016740082.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107949823
ghi-r.1
for
107954830
ghi-r.1
for
107952787
ghi-r.1
for
121203480
ath-u.5
for
ERF1-3
ath-u.5
for
ERF1-1
ath-u.5
for
ERF1-2
bra-r.6
for
103836133
bra-r.6
for
103846307
bra-r.6
for
103874912
bna-r.1
for
125575160
bna-r.1
for
106348956
bna-r.1
for
106382367
cit-r.1
for
102619042
cit-r.1
for
102617245
gma-u.5
for
100813343
gma-u.5
for
100786788
gma-u.5
for
100785916
vvi-u.5
for
100267567
vvi-u.5
for
100248954
vvi-u.5
for
100242471
ppo-u.5
for
7491448
ppo-u.5
for
7463221
ppo-u.5
for
7466289
mtr-u.5
for
11427620
mtr-u.5
for
11413561
mtr-u.5
for
25497360
sly-u.5
for
101261770
sly-u.5
for
101255309
sly-u.5
for
101251066
sot-r.1
for
102577912
sot-r.1
for
102596756
sot-r.1
for
102594296
nta-r.1
for
107795408
nta-r.1
for
107764677
nta-r.1
for
107770602
osa-u.5
for
4343757
osa-u.5
for
4338603
osa-u.5
for
4333840
zma-u.5
for
100281195
zma-u.5
for
100285172
tae-r.2
for
123087157
tae-r.2
for
123090806
tae-r.2
for
123080605
hvu-r.1
for
123412043
hvu-r.1
for
123445427
hvu-r.1
for
123447345
sbi-r.1
for
8055826
sbi-r.1
for
8058380
sbi-r.1
for
8062938
bdi-r.1
for
100821402
bdi-r.1
for
100844328
bdi-r.1
for
100824892
cre-r.1
for
CHLRE_13g587050v5


Ortholog ID: 1347
Species ghi ghi ghi ath ath ath bra bra bra bna bna bna cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta osa osa osa zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC107954830 LOC121203480 LOC107886140 ERF1-3 ERF1-1 ERF1-2 LOC103836133 LOC103846307 LOC103874912 LOC106382367 LOC106410576 LOC106415441 LOC102619042 LOC102617245 LOC100813343 LOC100775731 LOC106796341 LOC100267567 LOC100248954 LOC100242471 LOC7491448 LOC7463221 LOC7466289 LOC11427620 LOC11413561 LOC25497360 LOC101261770 LOC101255309 LOC101246720 LOC102577912 LOC102596756 LOC102583208 LOC107781127 LOC107798788 LOC4338603 LOC4333840 LOC4326511 LOC100281195 LOC100285172 LOC123044375 LOC123095813 LOC123174147 LOC123412043 LOC123445427 LOC123447345 LOC8055826 LOC8058380 LOC8062938 LOC100821402 LOC100844328 LOC100824892 CHLRE_13g587050v5
Function* eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic release factor 1-3 eukaryotic release factor 1-1 eukaryotic release factor 1-2 eukaryotic peptide chain release factor subunit 1-2 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-1 eukaryotic peptide chain release factor subunit 1-2 eukaryotic peptide chain release factor subunit 1-1 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3-like protein eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-2 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-1 eukaryotic peptide chain release factor subunit 1-1 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-2-like eukaryotic peptide chain release factor subunit 1-1-like eukaryotic peptide chain release factor subunit 1-3-like eukaryotic peptide chain release factor subunit 1-2 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-2 eukaryotic peptide chain release factor subunit 1-3 eukaryotic peptide chain release factor subunit 1-2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 7
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
ghi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 3
bra01240 Biosynthesis of cofactors 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03013 Nucleocytoplasmic transport 2
bra03250 Viral life cycle - HIV-1 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna03015 mRNA surveillance pathway 4
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 9
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 4
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 4
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo00480 Glutathione metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 4
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr00020 Citrate cycle (TCA cycle) 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
mtr01200 Carbon metabolism 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr00020 Citrate cycle (TCA cycle) 2
mtr00630 Glyoxylate and dicarboxylate metabolism 2
mtr01200 Carbon metabolism 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03050 Proteasome 2
sly00230 Purine metabolism 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04146 Peroxisome 3
sly00230 Purine metabolism 2
sly00232 Caffeine metabolism 2
sly01232 Nucleotide metabolism 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
sly00190 Oxidative phosphorylation 3
sly03015 mRNA surveillance pathway 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 5
sot00290 Valine, leucine and isoleucine biosynthesis 4
sot00770 Pantothenate and CoA biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa00020 Citrate cycle (TCA cycle) 2
osa01200 Carbon metabolism 2
osa03060 Protein export 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00020 Citrate cycle (TCA cycle) 2
zma01200 Carbon metabolism 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00510 N-Glycan biosynthesis 2
zma00513 Various types of N-glycan biosynthesis 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae04382 Cornified envelope formation 3
tae03050 Proteasome 2
tae04081 Hormone signaling 2
tae04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 4
sbi04016 MAPK signaling pathway - plant 3
sbi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 4
sbi01230 Biosynthesis of amino acids 3
sbi03015 mRNA surveillance pathway 2
sbi01240 Biosynthesis of cofactors 2
sbi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00260 Glycine, serine and threonine metabolism 2
bdi00410 beta-Alanine metabolism 2
bdi00500 Starch and sucrose metabolism 2
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi01240 Biosynthesis of cofactors 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107954830 121203480 107886140 822273 834839 837850 103836133 103846307 103874912 106382367 106410576 106415441 102619042 102617245 100813343 100775731 106796341 100267567 100248954 100242471 7491448 7463221 7466289 11427620 11413561 25497360 101261770 101255309 101246720 102577912 102596756 102583208 107781127 107798788 4338603 4333840 4326511 100281195 100285172 123044375 123095813 123174147 123412043 123445427 123447345 8055826 8058380 8062938 100821402 100844328 100824892 5719425
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