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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107952917   tRNA ligase 1 
 ghi-r.1   107959260   tRNA ligase 1 
 ghi-r.1   121229544   tRNA ligase 1-like 
 ghi-r.1   107922622   tRNA ligase 1 
 ath-u.5   RNL   RNAligase 
 bra-r.6   103843428   tRNA ligase 1 
 bra-r.6   103871536   tRNA ligase 1 
 bna-r.1   125587426   tRNA ligase 1-like 
 bna-r.1   106415140   tRNA ligase 1 
 bna-r.1   106346374   tRNA ligase 1 
 cit-r.1   102621146   tRNA ligase 1-like 
 gma-u.5   100815563   tRNA ligase 1 
 vvi-u.5   100258617   tRNA ligase 1 
 ppo-u.5   18106204   tRNA ligase 1 
 mtr-u.5   25492457   tRNA ligase 1 
 sly-u.5   101247886   tRNA ligase 1 
 sot-r.1   102604569   uncharacterized LOC102604569 
 nta-r.1   107811332   tRNA ligase 1 
 nta-r.1   107784404   tRNA ligase 1-like 
 osa-u.5   4342624   tRNA ligase 1 
 zma-u.5   103632082   tRNA ligase 1 
 tae-r.2   123135688   tRNA ligase 1 
 hvu-r.1   123425006   tRNA ligase 1 
 hvu-r.1   123404926   tRNA ligase 1-like 
 sbi-r.1   8063662   tRNA ligase 1 
 bdi-r.1   100845723   tRNA ligase 1 
 bdi-r.1   100846175   tRNA ligase 1 
 cre-r.1   CHLRE_07g352800v5   uncharacterized protein 

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Top 50 coexpressed genes to 107952917 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107952917 (ghi-r.1 coexpression data)

CoexMap"107952917"


ghiLOC107952917 | Entrez gene ID : 107952917    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 1 1 1 1 1 1 1 2 1 1 1 2 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006388 [list] [network] tRNA splicing, via endonucleolytic cleavage and ligation  (25 genes)  IEA  
GO CC
GO MF
GO:0003972 [list] [network] RNA ligase (ATP) activity  (6 genes)  IEA  
Protein XP_016743612.2 [sequence] [blastp]
XP_040973936.1 [sequence] [blastp]
XP_040973937.1 [sequence] [blastp]
XP_040973938.1 [sequence] [blastp]
XP_040973939.1 [sequence] [blastp]
XP_040973940.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cyto_nucl 5,  nucl 4  (predict for XP_016743612.2)
cyto 5,  cyto_nucl 5,  nucl 4  (predict for XP_040973936.1)
cyto 5,  cyto_nucl 5,  nucl 4  (predict for XP_040973937.1)
cyto 5,  cyto_nucl 5,  nucl 4  (predict for XP_040973938.1)
cyto 5,  cyto_nucl 5,  nucl 4  (predict for XP_040973939.1)
cyto 5,  cyto_nucl 5,  nucl 4  (predict for XP_040973940.1)
Subcellular
localization
TargetP
mito 5  (predict for XP_016743612.2)
mito 5  (predict for XP_040973936.1)
mito 5  (predict for XP_040973937.1)
mito 5  (predict for XP_040973938.1)
mito 5  (predict for XP_040973939.1)
mito 5  (predict for XP_040973940.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107952917
ghi-r.1
for
107959260
ghi-r.1
for
121229544
ghi-r.1
for
107922622
ath-u.5
for
RNL
bra-r.6
for
103843428
bra-r.6
for
103871536
bna-r.1
for
125587426
bna-r.1
for
106415140
bna-r.1
for
106346374
cit-r.1
for
102621146
gma-u.5
for
100815563
vvi-u.5
for
100258617
ppo-u.5
for
18106204
mtr-u.5
for
25492457
sly-u.5
for
101247886
sot-r.1
for
102604569
nta-r.1
for
107811332
nta-r.1
for
107784404
osa-u.5
for
4342624
zma-u.5
for
103632082
tae-r.2
for
123135688
hvu-r.1
for
123425006
hvu-r.1
for
123404926
sbi-r.1
for
8063662
bdi-r.1
for
100845723
bdi-r.1
for
100846175
cre-r.1
for
CHLRE_07g352800v5


Ortholog ID: 4458
Species ghi ghi ghi ath bra bra bna bna bna cit gma vvi ppo mtr sly sot nta nta osa zma tae hvu hvu sbi bdi bdi cre
Symbol LOC107952917 LOC107922622 LOC121229271 RNL LOC103843428 LOC103871536 LOC125587426 LOC106415140 LOC106346374 LOC102621146 LOC100815563 LOC100258617 LOC18106204 LOC25492457 LOC101247886 LOC102604569 LOC107811332 LOC107790870 LOC4342624 LOC103632082 LOC123187714 LOC123425006 LOC123404926 LOC8063662 LOC100845723 LOC100846175 CHLRE_07g352800v5
Function* tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 RNAligase tRNA ligase 1 tRNA ligase 1 tRNA ligase 1-like tRNA ligase 1 tRNA ligase 1 tRNA ligase 1-like tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 uncharacterized LOC102604569 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 tRNA ligase 1-like tRNA ligase 1 tRNA ligase 1 tRNA ligase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 3
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 4
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03020 RNA polymerase 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi00240 Pyrimidine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107952917 107922622 121229271 837306 103843428 103871536 125587426 106415140 106346374 102621146 100815563 100258617 18106204 25492457 101247886 102604569 107811332 107790870 4342624 103632082 123187714 123425006 123404926 8063662 100845723 100846175 5718201
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