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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107953119   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 ghi-r.1   107889242   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 ghi-r.1   107891499   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 ghi-r.1   107901960   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 ath-u.5   ADT2   arogenate dehydratase 2 
 ath-u.5   ADT1   arogenate dehydratase 1 
 bra-r.6   103836212   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 bra-r.6   103870648   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 bna-r.1   106380293   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 bna-r.1   106362165   arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like 
 bna-r.1   106452944   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 cit-r.1   102627790   arogenate dehydratase 2 
 cit-r.1   102619743   arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like 
 cit-r.1   102623111   arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like 
 gma-u.5   100792353   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 gma-u.5   100787759   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 gma-u.5   100787387   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 vvi-u.5   100265426   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 vvi-u.5   100245060   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 vvi-u.5   100245164   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 ppo-u.5   7479045   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 ppo-u.5   18111236   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 ppo-u.5   7469086   arogenate dehydratase 2 
 mtr-u.5   11412114   arogenate dehydratase 2 
 mtr-u.5   11417356   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 mtr-u.5   11438633   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 sly-u.5   101251350   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 sly-u.5   101251252   arogenate dehydratase 2 
 sot-r.1   102602486   arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like 
 sot-r.1   102599157   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 nta-r.1   107805165   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 nta-r.1   107796572   arogenate dehydratase 2-like 
 nta-r.1   107785483   arogenate dehydratase 2 
 osa-u.5   4332477   arogenate dehydratase 2 
 osa-u.5   4344396   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 zma-u.5   100281744   uncharacterized LOC100281744 
 zma-u.5   100273905   uncharacterized LOC100273905 
 zma-u.5   100273734   uncharacterized LOC100273734 
 tae-r.2   123043500   arogenate dehydratase 2 
 tae-r.2   123051364   arogenate dehydratase 2 
 tae-r.2   123085537   arogenate dehydratase 2 
 hvu-r.1   123424583   arogenate dehydratase 2-like 
 hvu-r.1   123448945   arogenate dehydratase 2-like 
 sbi-r.1   8081446   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 bdi-r.1   100837724   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 bdi-r.1   100835471   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 cre-r.1   CHLRE_06g261800v5   uncharacterized protein 

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Top 50 coexpressed genes to 107953119 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107953119 (ghi-r.1 coexpression data)

CoexMap"107953119"


ghiLOC107953119 | Entrez gene ID : 107953119    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 3 3 3 3 3 2 2 3 2 3 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (103 genes)
ghi01230 [list] [network] Biosynthesis of amino acids (568 genes)
GO BP
GO:0009094 [list] [network] L-phenylalanine biosynthetic process  (12 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1647 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (13864 genes)  IEA  
GO MF
GO:0004664 [list] [network] prephenate dehydratase activity  (12 genes)  IEA  
GO:0047769 [list] [network] arogenate dehydratase activity  (12 genes)  IEA  
Protein XP_016743834.2 [sequence] [blastp]
XP_016743836.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_016743834.2)
chlo 9,  nucl 1,  mito 1  (predict for XP_016743836.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_016743834.2)
chlo 7  (predict for XP_016743836.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107953119
ghi-r.1
for
107889242
ghi-r.1
for
107891499
ghi-r.1
for
107901960
ath-u.5
for
ADT2
ath-u.5
for
ADT1
bra-r.6
for
103836212
bra-r.6
for
103870648
bna-r.1
for
106380293
bna-r.1
for
106362165
bna-r.1
for
106452944
cit-r.1
for
102627790
cit-r.1
for
102619743
cit-r.1
for
102623111
gma-u.5
for
100792353
gma-u.5
for
100787759
gma-u.5
for
100787387
vvi-u.5
for
100265426
vvi-u.5
for
100245060
vvi-u.5
for
100245164
ppo-u.5
for
7479045
ppo-u.5
for
18111236
ppo-u.5
for
7469086
mtr-u.5
for
11412114
mtr-u.5
for
11417356
mtr-u.5
for
11438633
sly-u.5
for
101251350
sly-u.5
for
101251252
sot-r.1
for
102602486
sot-r.1
for
102599157
nta-r.1
for
107805165
nta-r.1
for
107796572
nta-r.1
for
107785483
osa-u.5
for
4332477
osa-u.5
for
4344396
zma-u.5
for
100281744
zma-u.5
for
100273905
zma-u.5
for
100273734
tae-r.2
for
123043500
tae-r.2
for
123051364
tae-r.2
for
123085537
hvu-r.1
for
123424583
hvu-r.1
for
123448945
sbi-r.1
for
8081446
bdi-r.1
for
100837724
bdi-r.1
for
100835471
cre-r.1
for
CHLRE_06g261800v5


Ortholog ID: 2143
Species ghi ghi ghi ath ath bra bra bna bna bna cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol LOC107891499 LOC107901960 LOC107954251 ADT2 ADT1 LOC103836212 LOC103870648 LOC106380293 LOC106397471 LOC106385680 LOC102619743 LOC102623111 LOC102607115 LOC100792353 LOC100787759 LOC100785311 LOC100265426 LOC100245060 LOC100245164 LOC7479045 LOC18111236 LOC7469086 LOC11412114 LOC11417356 LOC11438633 LOC101251350 LOC101251252 LOC102602486 LOC102599157 LOC107796572 LOC107785483 LOC107767889 LOC4332477 LOC4344396 LOC100281744 LOC100273905 LOC100273734 LOC123051364 LOC123187312 LOC123092498 LOC123424583 LOC123448945 LOC8081446 LOC100837724 LOC100835471 CHLRE_06g261800v5
Function* arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase 2 arogenate dehydratase 1 arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase 1 arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase 2 arogenate dehydratase 2 arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase 2 arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase 2-like arogenate dehydratase 2 arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase 2 arogenate dehydratase/prephenate dehydratase 2, chloroplastic uncharacterized LOC100281744 uncharacterized LOC100273905 uncharacterized LOC100273734 arogenate dehydratase 2 arogenate dehydratase 2 arogenate dehydratase 2 arogenate dehydratase 2-like arogenate dehydratase 2-like arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 10
ghi00290 Valine, leucine and isoleucine biosynthesis 8
ghi01210 2-Oxocarboxylic acid metabolism 8
ghi00230 Purine metabolism 4
ghi00770 Pantothenate and CoA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 4
ghi00670 One carbon pool by folate 4
ghi00790 Folate biosynthesis 4
ghi01232 Nucleotide metabolism 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
ghi04141 Protein processing in endoplasmic reticulum 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00290 Valine, leucine and isoleucine biosynthesis 3
ath00770 Pantothenate and CoA biosynthesis 2
ath01210 2-Oxocarboxylic acid metabolism 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 6
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath00670 One carbon pool by folate 3
ath01200 Carbon metabolism 3
ath00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00073 Cutin, suberine and wax biosynthesis 3
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
bra00240 Pyrimidine metabolism 2
bra00760 Nicotinate and nicotinamide metabolism 2
bra01232 Nucleotide metabolism 2
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
cit00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 7
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
vvi00062 Fatty acid elongation 2
vvi01040 Biosynthesis of unsaturated fatty acids 2
vvi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 13
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00670 One carbon pool by folate 5
ppo00270 Cysteine and methionine metabolism 4
ppo00999 Biosynthesis of various plant secondary metabolites 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
ppo00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 4
mtr01230 Biosynthesis of amino acids 4
mtr00230 Purine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00943 Isoflavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 11
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
mtr01200 Carbon metabolism 5
mtr00670 One carbon pool by folate 4
mtr00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 4
sot04142 Lysosome 3
sot04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00670 One carbon pool by folate 5
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 4
sot00330 Arginine and proline metabolism 3
sot00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta00270 Cysteine and methionine metabolism 6
nta00450 Selenocompound metabolism 6
nta03050 Proteasome 5
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 4
osa00220 Arginine biosynthesis 3
osa01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 4
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
zma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00380 Tryptophan metabolism 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
tae00260 Glycine, serine and threonine metabolism 2
tae00270 Cysteine and methionine metabolism 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
tae01230 Biosynthesis of amino acids 9
tae00010 Glycolysis / Gluconeogenesis 2
tae00040 Pentose and glucuronate interconversions 2
tae00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00290 Valine, leucine and isoleucine biosynthesis 9
tae01210 2-Oxocarboxylic acid metabolism 9
tae00660 C5-Branched dibasic acid metabolism 6
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 8
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
hvu00940 Phenylpropanoid biosynthesis 3
hvu01200 Carbon metabolism 3
hvu00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 10
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bdi01200 Carbon metabolism 4
bdi01240 Biosynthesis of cofactors 3
bdi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 6
cre00970 Aminoacyl-tRNA biosynthesis 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107891499 107901960 107954251 819954 837725 103836212 103870648 106380293 106397471 106385680 102619743 102623111 102607115 100792353 100787759 100785311 100265426 100245060 100245164 7479045 18111236 7469086 11412114 11417356 11438633 101251350 101251252 102602486 102599157 107796572 107785483 107767889 4332477 4344396 100281744 100273905 100273734 123051364 123187312 123092498 123424583 123448945 8081446 100837724 100835471 5722023
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