ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107953356	H/ACA ribonucleoprotein complex subunit 2-like protein
ghi-r.1	107887052	H/ACA ribonucleoprotein complex subunit 2-like protein
ghi-r.1	107926600	H/ACA ribonucleoprotein complex subunit 2-like protein
ghi-r.1	107949753	H/ACA ribonucleoprotein complex subunit 2-like protein
ath-u.5	AT5G08180	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
bra-r.6	103855764	H/ACA ribonucleoprotein complex subunit 2-like protein
bra-r.6	103850685	H/ACA ribonucleoprotein complex subunit 2-like protein
bra-r.6	103847136	H/ACA ribonucleoprotein complex subunit 2-like protein
bna-r.1	106433867	H/ACA ribonucleoprotein complex subunit 2-like protein
bna-r.1	106422615	H/ACA ribonucleoprotein complex subunit 2-like protein
cit-r.1	102610926	H/ACA ribonucleoprotein complex subunit 2-like protein
gma-u.5	100810689	H/ACA ribonucleoprotein complex subunit 2-like protein
gma-u.5	100804186	H/ACA ribonucleoprotein complex subunit 2-like protein
gma-u.5	100499993	uncharacterized LOC100499993
vvi-u.5	100266210	H/ACA ribonucleoprotein complex subunit 2-like protein
ppo-u.5	7485927	H/ACA ribonucleoprotein complex subunit 2-like protein
mtr-u.5	11443631	H/ACA ribonucleoprotein complex subunit 2-like protein
sly-u.5	101268074	H/ACA ribonucleoprotein complex subunit 2-like protein
sot-r.1	102600899	H/ACA ribonucleoprotein complex subunit 2-like protein
sot-r.1	102603701	H/ACA ribonucleoprotein complex subunit 2-like protein
nta-r.1	107793492	H/ACA ribonucleoprotein complex subunit 2-like protein
nta-r.1	107766976	H/ACA ribonucleoprotein complex subunit 2-like protein
osa-u.5	4330603	H/ACA ribonucleoprotein complex subunit 2-like protein
osa-u.5	4340741	H/ACA ribonucleoprotein complex subunit 2-like protein
zma-u.5	100193012	uncharacterized LOC100193012
zma-u.5	100383935	uncharacterized LOC100383935
tae-r.2	123145367	H/ACA ribonucleoprotein complex subunit 2-like protein
tae-r.2	123138118	H/ACA ribonucleoprotein complex subunit 2-like protein
tae-r.2	123128270	H/ACA ribonucleoprotein complex subunit 2-like protein
hvu-r.1	123403425	H/ACA ribonucleoprotein complex subunit 2-like protein
sbi-r.1	8071740	H/ACA ribonucleoprotein complex subunit 2-like protein
sbi-r.1	8076388	H/ACA ribonucleoprotein complex subunit 2-like protein
bdi-r.1	100824602	H/ACA ribonucleoprotein complex subunit 2-like protein
cre-r.1	CHLRE_16g690500v5	uncharacterized protein
cre-r.1	CHLRE_16g688600v5	uncharacterized protein

Top 50 coexpressed genes to 107953356 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107953356 (ghi-r.1 coexpression data)

CoexMap"107953356"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi03008 [list] [network] Ribosome biogenesis in eukaryotes (1571 genes)

GO BP

GO:0031120 [list] [network] snRNA pseudouridine synthesis	(11 genes)	IEA
GO:0031118 [list] [network] rRNA pseudouridine synthesis	(26 genes)	IEA
GO:0000470 [list] [network] maturation of LSU-rRNA	(98 genes)	IEA

GO CC

GO:0031429 [list] [network] box H/ACA snoRNP complex	(15 genes)	IEA
GO:0022625 [list] [network] cytosolic large ribosomal subunit	(467 genes)	IEA
GO:0005730 [list] [network] nucleolus	(469 genes)	IEA

GO MF

GO:0034513 [list] [network] box H/ACA snoRNA binding

(9 genes)

IEA

Protein

XP_016744134.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, extr 1

(predict for XP_016744134.1)

Subcellular
localization
TargetP

other 9

(predict for XP_016744134.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107953356	ghi-r.1 for 107887052	ghi-r.1 for 107926600	ghi-r.1 for 107949753	ath-u.5 for AT5G08180	bra-r.6 for 103855764	bra-r.6 for 103850685	bra-r.6 for 103847136	bna-r.1 for 106433867	bna-r.1 for 106422615	cit-r.1 for 102610926	gma-u.5 for 100810689	gma-u.5 for 100804186	gma-u.5 for 100499993	vvi-u.5 for 100266210	ppo-u.5 for 7485927	mtr-u.5 for 11443631	sly-u.5 for 101268074	sot-r.1 for 102600899	sot-r.1 for 102603701	nta-r.1 for 107793492	nta-r.1 for 107766976	osa-u.5 for 4330603	osa-u.5 for 4340741	zma-u.5 for 100193012	zma-u.5 for 100383935	tae-r.2 for 123145367	tae-r.2 for 123138118	tae-r.2 for 123128270	hvu-r.1 for 123403425	sbi-r.1 for 8071740	sbi-r.1 for 8076388	bdi-r.1 for 100824602	cre-r.1 for CHLRE_16g690500v5	cre-r.1 for CHLRE_16g688600v5

Ortholog

Ortholog ID: 4605

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

H/ACA ribonucleoprotein complex subunit 2-like protein

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

H/ACA ribonucleoprotein complex subunit 2-like protein

uncharacterized LOC100499993

uncharacterized LOC100305515

H/ACA ribonucleoprotein complex subunit 2-like protein

uncharacterized LOC100193012

uncharacterized LOC100383935

H/ACA ribonucleoprotein complex subunit 2-like protein

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	5
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	9
ath03008	Ribosome biogenesis in eukaryotes	5
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	8
bra03008	Ribosome biogenesis in eukaryotes	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	9
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5
bna03018	RNA degradation	2
bna00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	5
bna03018	RNA degradation	2
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	11
gma03008	Ribosome biogenesis in eukaryotes	6
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	6
gma03008	Ribosome biogenesis in eukaryotes	6
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	13
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	4
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	12
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	9
mtr03030	DNA replication	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	5
sly03008	Ribosome biogenesis in eukaryotes	3
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	8
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	6
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03010	Ribosome	2
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	7
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	5
zma03040	Spliceosome	4
zma03008	Ribosome biogenesis in eukaryotes	3
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	9
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	4
tae03008	Ribosome biogenesis in eukaryotes	4
tae03010	Ribosome	4
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae03008	Ribosome biogenesis in eukaryotes	3
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7
hvu03008	Ribosome biogenesis in eukaryotes	4
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	6
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	9
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	7
cre03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	7

Expression

Expression pattern

Entrez Gene ID^*

107926600

107949753

107951197

830714

103855764

103850685

103847136

106433867

106422615

106384981

102610926

100804186

100499993

100305515

100266210

7485927

11443631

101268074

102600899

102603701

107793492

107766976

4330603

4340741

100193012

100383935

123145367

123138118

123128270

123403425

8071740

8076388

100824602

5724732

5724750

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Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	3	2	1	3	1	1	1	1	2	2	2	2	3	1	2	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107953356 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107953356 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**