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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107953494   truncated transcription factor CAULIFLOWER A 
 ath-u.5   AP1   K-box region and MADS-box transcription factor family protein 
 ath-u.5   AGL8   AGAMOUS-like 8 
 gma-u.5   100805348   truncated transcription factor CAULIFLOWER A 
 gma-u.5   AP1   MADS-box transcription factor 
 gma-u.5   FULC   MADS-box protein FULc 
 vvi-u.5   100257072   truncated transcription factor CAULIFLOWER A 
 vvi-u.5   VFUL-L   FUL-like protein 
 vvi-u.5   AP1   apetala1 
 ppo-u.5   7468138   truncated transcription factor CAULIFLOWER A 
 mtr-u.5   25488419   truncated transcription factor CAULIFLOWER A 
 sly-u.5   FUL2   transcription factor FRUITFULL 
 osa-u.5   4342214   MADS-box transcription factor 15-like 
 osa-u.5   4334140   MADS-box transcription factor 14-like 
 zma-u.5   542032   m15 protein 
 zma-u.5   542041   m4 protein 
 zma-u.5   542257   zea apetala homolog 1 

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Top 50 coexpressed genes to 107953494 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107953494 (ghi-r.1 coexpression data)

CoexMap"107953494"


ghiLOC107953494 | Entrez gene ID : 107953494    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 2 3 3 1 1 1 2 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (349 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (605 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (729 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1206 genes)  IEA  
Protein NP_001314537.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001314537.1)
Subcellular
localization
TargetP
mito 6,  other 6  (predict for NP_001314537.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107953494
ath-u.5
for
AP1
ath-u.5
for
AGL8
gma-u.5
for
100805348
gma-u.5
for
AP1
gma-u.5
for
FULC
vvi-u.5
for
100257072
vvi-u.5
for
VFUL-L
vvi-u.5
for
AP1
ppo-u.5
for
7468138
mtr-u.5
for
25488419
sly-u.5
for
FUL2
osa-u.5
for
4342214
osa-u.5
for
4334140
zma-u.5
for
542032
zma-u.5
for
542041
zma-u.5
for
542257


Ortholog ID: 1094
Species ath bna cit cit vvi vvi ppo ppo mtr sly sot sot osa osa zma zma tae tae sbi sbi bdi bdi
Symbol AGL8 LOC106439964 AP1 LOC102612359 LOC100257072 AP1 LOC7484716 LOC7468138 LOC25488419 FUL1 FUL2 FUL1 LOC4334140 LOC4342214 LOC542257 LOC541765 LOC780641 LOC543351 LOC8054531 LOC8085925 LOC100842079 LOC100845222
Function* AGAMOUS-like 8 agamous-like MADS-box protein AGL8 homolog APETALA1 truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A apetala1 truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A truncated transcription factor CAULIFLOWER A agamous-like MADS-box protein AGL8 homolog agamous-like MADS-box protein AGL8 homolog Agamous-like MADS-box protein AGL8 homolog MADS-box transcription factor 14-like MADS-box transcription factor 15-like zea apetala homolog 1 MADS3 MADS-box transcription factor 15 mads11 protein MADS-box transcription factor 15 MADS-box transcription factor 14 MADS-box transcription factor 14-like MADS-box transcription factor 15-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 2
sot00350 Tyrosine metabolism 2
sot00360 Phenylalanine metabolism 2
sot00410 beta-Alanine metabolism 2
sot00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836212 106439964 102578018 102612359 100257072 100232952 7484716 7468138 25488419 543839 102583048 102577795 4334140 4342214 542257 541765 780641 543351 8054531 8085925 100842079 100845222
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