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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107953703   ribosome biogenesis regulatory protein homolog 
 ghi-r.1   121232010   ribosome biogenesis regulatory protein homolog 
 ghi-r.1   121204861   ribosome biogenesis regulatory protein homolog 
 ghi-r.1   107907271   ribosome biogenesis regulatory protein homolog 
 ath-u.5   AT2G37990   ribosome biogenesis regulatory protein (RRS1) family protein 
 bra-r.6   103857753   ribosome biogenesis regulatory protein homolog 
 bra-r.6   103865644   ribosome biogenesis regulatory protein homolog 
 bna-r.1   106358619   ribosome biogenesis regulatory protein homolog 
 bna-r.1   106427710   ribosome biogenesis regulatory protein homolog 
 bna-r.1   106402346   ribosome biogenesis regulatory protein homolog 
 cit-r.1   102624768   ribosome biogenesis regulatory protein homolog 
 gma-u.5   100527796   ribosome biogenesis regulatory protein homolog 
 gma-u.5   100500145   ribosome biogenesis regulatory protein homolog 
 vvi-u.5   100253336   ribosome biogenesis regulatory protein homolog 
 vvi-u.5   100252416   ribosome biogenesis regulatory protein homolog 
 ppo-u.5   7454378   ribosome biogenesis regulatory protein homolog 
 mtr-u.5   11421167   ribosome biogenesis regulatory protein homolog 
 sly-u.5   101263184   ribosome biogenesis regulatory protein homolog 
 sot-r.1   102593560   ribosome biogenesis regulatory protein homolog 
 nta-r.1   107768260   ribosome biogenesis regulatory protein homolog 
 nta-r.1   107783357   ribosome biogenesis regulatory protein homolog 
 nta-r.1   107790106   ribosome biogenesis regulatory protein homolog 
 osa-u.5   4337459   ribosome biogenesis regulatory protein homolog 
 zma-u.5   103634879   ribosome biogenesis regulatory protein homolog 
 zma-u.5   100192946   uncharacterized LOC100192946 
 tae-r.2   123132018   ribosome biogenesis regulatory protein homolog 
 tae-r.2   123136005   ribosome biogenesis regulatory protein homolog 
 tae-r.2   123143554   ribosome biogenesis regulatory protein homolog 
 hvu-r.1   123402215   ribosome biogenesis regulatory protein homolog 
 hvu-r.1   123405404   ribosome biogenesis regulatory protein homolog 
 sbi-r.1   8056517   ribosome biogenesis regulatory protein homolog 
 bdi-r.1   100830935   ribosome biogenesis regulatory protein homolog 
 cre-r.1   CHLRE_01g020950v5   uncharacterized protein 

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Top 50 coexpressed genes to 107953703 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107953703 (ghi-r.1 coexpression data)

CoexMap"107953703"


ghiLOC107953703 | Entrez gene ID : 107953703    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 1 2 2 1 1 1 1 3 1 2 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000447 [list] [network] endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (18 genes)  IEA  
GO:0042273 [list] [network] ribosomal large subunit biogenesis  (235 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (752 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (51 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (469 genes)  IEA  
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016744578.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  plas 1,  pero 1,  cysk 1,  cysk_plas 1  (predict for XP_016744578.1)
Subcellular
localization
TargetP
other 6  (predict for XP_016744578.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107953703
ghi-r.1
for
121232010
ghi-r.1
for
121204861
ghi-r.1
for
107907271
ath-u.5
for
AT2G37990
bra-r.6
for
103857753
bra-r.6
for
103865644
bna-r.1
for
106358619
bna-r.1
for
106427710
bna-r.1
for
106402346
cit-r.1
for
102624768
gma-u.5
for
100527796
gma-u.5
for
100500145
vvi-u.5
for
100253336
vvi-u.5
for
100252416
ppo-u.5
for
7454378
mtr-u.5
for
11421167
sly-u.5
for
101263184
sot-r.1
for
102593560
nta-r.1
for
107768260
nta-r.1
for
107783357
nta-r.1
for
107790106
osa-u.5
for
4337459
zma-u.5
for
103634879
zma-u.5
for
100192946
tae-r.2
for
123132018
tae-r.2
for
123136005
tae-r.2
for
123143554
hvu-r.1
for
123402215
hvu-r.1
for
123405404
sbi-r.1
for
8056517
bdi-r.1
for
100830935
cre-r.1
for
CHLRE_01g020950v5


Ortholog ID: 5087
Species ghi ghi ghi ath bra bra bna bna bna cit gma gma vvi vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC107953703 LOC121232010 LOC121204861 AT2G37990 LOC103857753 LOC103865644 LOC106427710 LOC106402346 LOC106438172 LOC102624768 LOC100527796 LOC100500145 LOC100253336 LOC100252416 LOC7454378 LOC11421167 LOC101263184 LOC102593560 LOC107783357 LOC107790106 LOC4337459 LOC103634879 LOC100192946 LOC123132018 LOC123136005 LOC123188799 LOC123402215 LOC123405404 LOC8056517 LOC100830935 CHLRE_01g020950v5
Function* ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein (RRS1) family protein ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog uncharacterized LOC100192946 ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog ribosome biogenesis regulatory protein homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 3
ghi03015 mRNA surveillance pathway 3
ghi03040 Spliceosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03040 Spliceosome 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03013 Nucleocytoplasmic transport 2
tae00240 Pyrimidine metabolism 2
tae01232 Nucleotide metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 11
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107953703 121232010 121204861 818377 103857753 103865644 106427710 106402346 106438172 102624768 100527796 100500145 100253336 100252416 7454378 11421167 101263184 102593560 107783357 107790106 4337459 103634879 100192946 123132018 123136005 123188799 123402215 123405404 8056517 100830935 5715202
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