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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107954039   transcription initiation factor TFIID subunit 6 
 ghi-r.1   121219393   transcription initiation factor TFIID subunit 6 
 ghi-r.1   107960540   uncharacterized LOC107960540 
 ghi-r.1   107956070   transcription initiation factor TFIID subunit 6b-like 
 ath-u.5   TAFII59   TATA BOX ASSOCIATED FACTOR II 59 
 ath-u.5   TAF6B   TBP-ASSOCIATED FACTOR 6B 
 bra-r.6   103836545   transcription initiation factor TFIID subunit 6 
 bra-r.6   103844197   transcription initiation factor TFIID subunit 6 
 bna-r.1   111199881   transcription initiation factor TFIID subunit 6-like 
 bna-r.1   106400898   transcription initiation factor TFIID subunit 6 
 bna-r.1   106370969   transcription initiation factor TFIID subunit 6 
 cit-r.1   102627223   transcription initiation factor TFIID subunit 6 
 cit-r.1   102607535   transcription initiation factor TFIID subunit 6 
 gma-u.5   100803416   transcription initiation factor TFIID subunit 6 
 gma-u.5   100799998   transcription initiation factor TFIID subunit 6 
 gma-u.5   100788777   transcription initiation factor TFIID subunit 6 
 vvi-u.5   100263756   transcription initiation factor TFIID subunit 6 
 vvi-u.5   100265835   transcription initiation factor TFIID subunit 6 
 ppo-u.5   7468541   transcription initiation factor TFIID subunit 6 
 ppo-u.5   7487521   transcription initiation factor TFIID subunit 6 
 mtr-u.5   11443540   transcription initiation factor TFIID subunit 6 
 mtr-u.5   11432982   transcription initiation factor TFIID subunit 6 
 sly-u.5   101264035   transcription initiation factor TFIID subunit 6-like 
 sly-u.5   101253325   transcription initiation factor TFIID subunit 6 
 sot-r.1   102596874   transcription initiation factor TFIID subunit 6-like 
 sot-r.1   102598962   transcription initiation factor TFIID subunit 6-like 
 nta-r.1   107824422   transcription initiation factor TFIID subunit 6 
 nta-r.1   107819860   transcription initiation factor TFIID subunit 6 
 nta-r.1   107808745   transcription initiation factor TFIID subunit 6 
 osa-u.5   4324027   transcription initiation factor TFIID subunit 6 
 zma-u.5   100217288   uncharacterized LOC100217288 
 tae-r.2   123179778   transcription initiation factor TFIID subunit 6 
 tae-r.2   123102793   transcription initiation factor TFIID subunit 6 
 tae-r.2   123184315   transcription initiation factor TFIID subunit 6 
 hvu-r.1   123445732   transcription initiation factor TFIID subunit 6 
 sbi-r.1   8068710   transcription initiation factor TFIID subunit 6 
 sbi-r.1   110431610   transcription initiation factor TFIID subunit 6-like 
 bdi-r.1   100830054   transcription initiation factor TFIID subunit 6 
 cre-r.1   CHLRE_07g349950v5   uncharacterized protein 

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Top 50 coexpressed genes to 107954039 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107954039 (ghi-r.1 coexpression data)

CoexMap"107954039"


ghiLOC107954039 | Entrez gene ID : 107954039    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 2 3 2 2 2 2 2 3 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03022 [list] [network] Basal transcription factors (119 genes)
GO BP
GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly  (30 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (83 genes)  IEA  
GO CC
GO:0046695 [list] [network] SLIK (SAGA-like) complex  (15 genes)  IEA  
GO:0005669 [list] [network] transcription factor TFIID complex  (53 genes)  IEA  
GO:0000124 [list] [network] SAGA complex  (57 genes)  IEA  
GO MF
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (51 genes)  IEA  
GO:0003713 [list] [network] transcription coactivator activity  (85 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (254 genes)  IEA  
Protein XP_016744984.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 3,  cyto 2,  E.R. 2,  nucl_plas 2,  cyto_E.R. 2  (predict for XP_016744984.2)
Subcellular
localization
TargetP
other 7  (predict for XP_016744984.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107954039
ghi-r.1
for
121219393
ghi-r.1
for
107960540
ghi-r.1
for
107956070
ath-u.5
for
TAFII59
ath-u.5
for
TAF6B
bra-r.6
for
103836545
bra-r.6
for
103844197
bna-r.1
for
111199881
bna-r.1
for
106400898
bna-r.1
for
106370969
cit-r.1
for
102627223
cit-r.1
for
102607535
gma-u.5
for
100803416
gma-u.5
for
100799998
gma-u.5
for
100788777
vvi-u.5
for
100263756
vvi-u.5
for
100265835
ppo-u.5
for
7468541
ppo-u.5
for
7487521
mtr-u.5
for
11443540
mtr-u.5
for
11432982
sly-u.5
for
101264035
sly-u.5
for
101253325
sot-r.1
for
102596874
sot-r.1
for
102598962
nta-r.1
for
107824422
nta-r.1
for
107819860
nta-r.1
for
107808745
osa-u.5
for
4324027
zma-u.5
for
100217288
tae-r.2
for
123179778
tae-r.2
for
123102793
tae-r.2
for
123184315
hvu-r.1
for
123445732
sbi-r.1
for
8068710
sbi-r.1
for
110431610
bdi-r.1
for
100830054
cre-r.1
for
CHLRE_07g349950v5


Ortholog ID: 4316
Species ghi ghi ghi ath ath bra bra bna bna bna cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC121219393 LOC107944495 LOC107932708 TAFII59 TAF6B LOC103836545 LOC103844197 LOC111199881 LOC106400898 LOC106370969 LOC102627223 LOC102607535 LOC100803416 LOC100788777 LOC100783444 LOC100263756 LOC100265835 LOC7468541 LOC7487521 LOC11443540 LOC11432982 LOC101264035 LOC101253325 LOC102596874 LOC102598962 LOC107824422 LOC107819860 LOC107808745 LOC4324027 LOC100217288 LOC123179778 LOC123102793 LOC123184315 LOC123445732 LOC8068710 LOC110431610 LOC100830054 CHLRE_07g349950v5
Function* transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 TATA BOX ASSOCIATED FACTOR II 59 TBP-ASSOCIATED FACTOR 6B transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 uncharacterized LOC100217288 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi03013 Nucleocytoplasmic transport 2
ghi03040 Spliceosome 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit00900 Terpenoid backbone biosynthesis 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma05100 Bacterial invasion of epithelial cells 3
gma04141 Protein processing in endoplasmic reticulum 3
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma04016 MAPK signaling pathway - plant 2
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03250 Viral life cycle - HIV-1 3
ppo03018 RNA degradation 3
ppo03420 Nucleotide excision repair 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
sly00020 Citrate cycle (TCA cycle) 2
sly00620 Pyruvate metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03060 Protein export 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04146 Peroxisome 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 3
tae01200 Carbon metabolism 3
tae00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 121219393 107944495 107932708 839370 841877 103836545 103844197 111199881 106400898 106370969 102627223 102607535 100803416 100788777 100783444 100263756 100265835 7468541 7487521 11443540 11432982 101264035 101253325 102596874 102598962 107824422 107819860 107808745 4324027 100217288 123179778 123102793 123184315 123445732 8068710 110431610 100830054 5718057
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