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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107955571   U-box domain-containing protein 40 
 ath-u.5   PUB39   PLANT U-BOX 39 
 ath-u.5   AT5G40140   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 ath-u.5   AT5G62560   RING/U-box superfamily protein with ARM repeat domain-containing protein 
 gma-u.5   100798675   U-box domain-containing protein 40 
 gma-u.5   100784564   U-box domain-containing protein 38 
 gma-u.5   100815075   U-box domain-containing protein 38 
 vvi-u.5   100255877   U-box domain-containing protein 40 
 vvi-u.5   100244998   U-box domain-containing protein 38 
 ppo-u.5   7453750   U-box domain-containing protein 38 
 ppo-u.5   7458016   U-box domain-containing protein 38 
 mtr-u.5   11434906   U-box domain-containing protein 40 
 mtr-u.5   25489555   U-box domain-containing protein 38 
 sly-u.5   101258053   U-box domain-containing protein 38 
 sly-u.5   101243948   U-box domain-containing protein 40 
 osa-u.5   4340611   U-box domain-containing protein 39 
 osa-u.5   107276525   U-box domain-containing protein 39 
 zma-u.5   103637803   U-box domain-containing protein 39 

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Top 50 coexpressed genes to 107955571 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107955571 (ghi-r.1 coexpression data)

CoexMap"107955571"


ghiLOC107955571 | Entrez gene ID : 107955571    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 3 3 2 2 2 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (962 genes)  IEA  
GO CC
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (871 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016746851.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  mito 1,  chlo 1,  cyto_mito 1,  cysk_nucl 1,  nucl_plas 1,  E.R._vacu 1,  mito_plas 1  (predict for XP_016746851.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016746851.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107955571
ath-u.5
for
PUB39
ath-u.5
for
AT5G40140
ath-u.5
for
AT5G62560
gma-u.5
for
100798675
gma-u.5
for
100784564
gma-u.5
for
100815075
vvi-u.5
for
100255877
vvi-u.5
for
100244998
ppo-u.5
for
7453750
ppo-u.5
for
7458016
mtr-u.5
for
11434906
mtr-u.5
for
25489555
sly-u.5
for
101258053
sly-u.5
for
101243948
osa-u.5
for
4340611
osa-u.5
for
107276525
zma-u.5
for
103637803


Ortholog ID: 2734
Species ghi ghi ath ath bra bra bna bna cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma tae tae hvu sbi bdi
Symbol LOC107958591 LOC107955571 AT5G62560 PUB38 LOC103863953 LOC103855018 LOC125581596 LOC106382884 LOC102630257 LOC102627264 LOC100784564 LOC100775869 LOC100244998 LOC100255877 LOC7453750 LOC7458016 LOC25489555 LOC11434906 LOC101243948 LOC101258053 LOC102580324 LOC102582496 LOC107794293 LOC107765884 LOC4340611 LOC107276525 LOC103637803 LOC123165193 LOC123152078 LOC123409895 LOC8065702 LOC100825276
Function* U-box domain-containing protein 40 U-box domain-containing protein 40 RING/U-box superfamily protein with ARM repeat domain-containing protein plant U-box 38 U-box domain-containing protein 40 U-box domain-containing protein 41 U-box domain-containing protein 38-like U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 38-like U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 38 U-box domain-containing protein 38 U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 40 U-box domain-containing protein 38 U-box domain-containing protein 40 U-box domain-containing protein 38-like U-box domain-containing protein 40-like U-box domain-containing protein 40-like U-box domain-containing protein 39 U-box domain-containing protein 39 U-box domain-containing protein 39 U-box domain-containing protein 39 U-box domain-containing protein 41-like U-box domain-containing protein 40 U-box domain-containing protein 39 U-box domain-containing protein 39
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04016 MAPK signaling pathway - plant 3
tae04070 Phosphatidylinositol signaling system 3
tae04075 Plant hormone signal transduction 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 3
hvu04016 MAPK signaling pathway - plant 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107958591 107955571 836376 836643 103863953 103855018 125581596 106382884 102630257 102627264 100784564 100775869 100244998 100255877 7453750 7458016 25489555 11434906 101243948 101258053 102580324 102582496 107794293 107765884 4340611 107276525 103637803 123165193 123152078 123409895 8065702 100825276
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